Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.16■□□□□ 0.66
USF3Q68DE3 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
USF3Q68DE3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.16■□□□□ 0.66
USF3Q68DE3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
USF3Q68DE3 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 SLC47A1P1-202ENST00000449666 945 ntBASIC19.15■□□□□ 0.66
USF3Q68DE3 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.15■□□□□ 0.66
USF3Q68DE3 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.15■□□□□ 0.66
USF3Q68DE3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
USF3Q68DE3 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
USF3Q68DE3 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.15■□□□□ 0.66
USF3Q68DE3 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USF3Q68DE3 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.14■□□□□ 0.66
USF3Q68DE3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.66
USF3Q68DE3 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.14■□□□□ 0.66
USF3Q68DE3 HLA-L-211ENST00000482052 1765 ntBASIC19.14■□□□□ 0.66
USF3Q68DE3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
USF3Q68DE3 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
USF3Q68DE3 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USF3Q68DE3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USF3Q68DE3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USF3Q68DE3 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L2-201ENST00000561772 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 AC022517.1-201ENST00000592429 346 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L6-201ENST00000626483 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L1-201ENST00000627662 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L8-201ENST00000629013 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L3-201ENST00000630187 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L7-201ENST00000630678 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 DUX4L5-201ENST00000630834 1275 ntBASIC19.14■□□□□ 0.65
USF3Q68DE3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.14■□□□□ 0.65
USF3Q68DE3 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.14■□□□□ 0.65
USF3Q68DE3 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.13■□□□□ 0.65
USF3Q68DE3 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.13■□□□□ 0.65
USF3Q68DE3 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.13■□□□□ 0.65
USF3Q68DE3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.13■□□□□ 0.65
USF3Q68DE3 AC004812.2-201ENST00000611079 2094 ntBASIC19.13■□□□□ 0.65
USF3Q68DE3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.13■□□□□ 0.65
USF3Q68DE3 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.13■□□□□ 0.65
USF3Q68DE3 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USF3Q68DE3 ASB1-202ENST00000409297 878 ntTSL 5 BASIC19.13■□□□□ 0.65
USF3Q68DE3 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.13■□□□□ 0.65
USF3Q68DE3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.13■□□□□ 0.65
USF3Q68DE3 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.13■□□□□ 0.65
USF3Q68DE3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.13■□□□□ 0.65
USF3Q68DE3 AC009086.3-201ENST00000623486 1008 ntBASIC19.13■□□□□ 0.65
USF3Q68DE3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 ABCB10P4-201ENST00000566803 2184 ntBASIC19.13■□□□□ 0.65
USF3Q68DE3 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USF3Q68DE3 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USF3Q68DE3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC19.12■□□□□ 0.65
USF3Q68DE3 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC19.12■□□□□ 0.65
USF3Q68DE3 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USF3Q68DE3 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USF3Q68DE3 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC19.12■□□□□ 0.65
USF3Q68DE3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.12■□□□□ 0.65
USF3Q68DE3 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USF3Q68DE3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.12■□□□□ 0.65
USF3Q68DE3 AC126544.1-201ENST00000580842 1059 ntBASIC19.12■□□□□ 0.65
USF3Q68DE3 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USF3Q68DE3 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC19.12■□□□□ 0.65
USF3Q68DE3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
USF3Q68DE3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
USF3Q68DE3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USF3Q68DE3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USF3Q68DE3 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USF3Q68DE3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USF3Q68DE3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
USF3Q68DE3 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.11■□□□□ 0.65
USF3Q68DE3 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
USF3Q68DE3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.11■□□□□ 0.65
USF3Q68DE3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.1■□□□□ 0.65
USF3Q68DE3 pRNA.6-201ENST00000610482 90 ntBASIC19.1■□□□□ 0.65
USF3Q68DE3 pRNA.5-201ENST00000612139 90 ntBASIC19.1■□□□□ 0.65
USF3Q68DE3 pRNA.11-201ENST00000618423 90 ntBASIC19.1■□□□□ 0.65
USF3Q68DE3 pRNA.13-201ENST00000619112 90 ntBASIC19.1■□□□□ 0.65
USF3Q68DE3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms