Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 AC133637.1-201ENST00000624115 1537 ntBASIC22.21■■□□□ 1.15
LRRK1Q38SD2 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.21■■□□□ 1.15
LRRK1Q38SD2 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 AC027682.1-201ENST00000562846 899 ntBASIC22.2■■□□□ 1.14
LRRK1Q38SD2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.2■■□□□ 1.14
LRRK1Q38SD2 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 CA15P2-201ENST00000611168 834 ntBASIC22.19■■□□□ 1.14
LRRK1Q38SD2 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 BX842568.3-201ENST00000418104 571 ntBASIC22.19■■□□□ 1.14
LRRK1Q38SD2 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LRRK1Q38SD2 AC092068.2-201ENST00000590491 1708 ntBASIC22.18■■□□□ 1.14
LRRK1Q38SD2 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.18■■□□□ 1.14
LRRK1Q38SD2 AC026271.2-201ENST00000428091 497 ntBASIC22.18■■□□□ 1.14
LRRK1Q38SD2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC22.17■■□□□ 1.14
LRRK1Q38SD2 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 DUX4L4-201ENST00000566884 1269 ntBASIC22.16■■□□□ 1.14
LRRK1Q38SD2 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
LRRK1Q38SD2 AC233992.3-201ENST00000607491 485 ntBASIC22.16■■□□□ 1.14
LRRK1Q38SD2 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
LRRK1Q38SD2 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
LRRK1Q38SD2 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC22.14■■□□□ 1.14
LRRK1Q38SD2 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC22.14■■□□□ 1.14
LRRK1Q38SD2 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.14■■□□□ 1.14
LRRK1Q38SD2 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRRK1Q38SD2 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.14■■□□□ 1.13
LRRK1Q38SD2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC22.14■■□□□ 1.13
LRRK1Q38SD2 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
LRRK1Q38SD2 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LRRK1Q38SD2 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.14■■□□□ 1.13
LRRK1Q38SD2 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
LRRK1Q38SD2 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRK1Q38SD2 AC004687.1-201ENST00000579003 1625 ntBASIC22.12■■□□□ 1.13
LRRK1Q38SD2 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
LRRK1Q38SD2 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC22.12■■□□□ 1.13
LRRK1Q38SD2 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.12■■□□□ 1.13
LRRK1Q38SD2 AC126544.1-201ENST00000580842 1059 ntBASIC22.12■■□□□ 1.13
LRRK1Q38SD2 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.12■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms