Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.41■■□□□ 1.02
COL28A1Q2UY09 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.4■■□□□ 1.02
COL28A1Q2UY09 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.4■■□□□ 1.02
COL28A1Q2UY09 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.4■■□□□ 1.02
COL28A1Q2UY09 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.4■■□□□ 1.02
COL28A1Q2UY09 RAP2CP1-201ENST00000605103 478 ntBASIC21.4■■□□□ 1.02
COL28A1Q2UY09 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
COL28A1Q2UY09 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
COL28A1Q2UY09 AC138932.3-201ENST00000567634 1902 ntBASIC21.39■■□□□ 1.02
COL28A1Q2UY09 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.39■■□□□ 1.02
COL28A1Q2UY09 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.39■■□□□ 1.02
COL28A1Q2UY09 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 AC006455.2-201ENST00000429931 906 ntBASIC21.39■■□□□ 1.01
COL28A1Q2UY09 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
COL28A1Q2UY09 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 CDCA4P2-201ENST00000441182 718 ntBASIC21.38■■□□□ 1.01
COL28A1Q2UY09 MIR6089-201ENST00000616698 64 ntBASIC21.38■■□□□ 1.01
COL28A1Q2UY09 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
COL28A1Q2UY09 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.37■■□□□ 1.01
COL28A1Q2UY09 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 AC012414.1-201ENST00000556676 535 ntBASIC21.37■■□□□ 1.01
COL28A1Q2UY09 AC241377.3-202ENST00000626088 1088 ntBASIC21.37■■□□□ 1.01
COL28A1Q2UY09 AC241585.3-202ENST00000628937 1088 ntBASIC21.37■■□□□ 1.01
COL28A1Q2UY09 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 AC073111.5-205ENST00000641717 521 ntBASIC21.37■■□□□ 1.01
COL28A1Q2UY09 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
COL28A1Q2UY09 AC009102.2-201ENST00000606772 1639 ntBASIC21.37■■□□□ 1.01
COL28A1Q2UY09 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 CD99P1-205ENST00000527459 561 ntBASIC21.36■■□□□ 1.01
COL28A1Q2UY09 MIR3181-201ENST00000578512 73 ntBASIC21.36■■□□□ 1.01
COL28A1Q2UY09 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 AL109923.1-201ENST00000618799 583 ntBASIC21.36■■□□□ 1.01
COL28A1Q2UY09 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL28A1Q2UY09 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
COL28A1Q2UY09 MAP2K4P1-201ENST00000438453 1195 ntBASIC21.35■■□□□ 1.01
COL28A1Q2UY09 TSPY20P-201ENST00000450910 630 ntBASIC21.35■■□□□ 1.01
COL28A1Q2UY09 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.35■■□□□ 1.01
COL28A1Q2UY09 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.35■■□□□ 1.01
COL28A1Q2UY09 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL28A1Q2UY09 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL28A1Q2UY09 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
COL28A1Q2UY09 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.33■■□□□ 1.01
COL28A1Q2UY09 TERF1P2-201ENST00000583350 1212 ntBASIC21.33■■□□□ 1.01
COL28A1Q2UY09 AL354811.1-201ENST00000610286 706 ntBASIC21.33■■□□□ 1.01
COL28A1Q2UY09 AP003733.4-201ENST00000623785 1697 ntBASIC21.33■■□□□ 1
COL28A1Q2UY09 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL28A1Q2UY09 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
COL28A1Q2UY09 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
COL28A1Q2UY09 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
COL28A1Q2UY09 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms