Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.97■□□□□ 0.79
H3F3AP84243 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.97■□□□□ 0.79
H3F3AP84243 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
H3F3AP84243 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.96■□□□□ 0.79
H3F3AP84243 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.96■□□□□ 0.79
H3F3AP84243 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
H3F3AP84243 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
H3F3AP84243 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
H3F3AP84243 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.96■□□□□ 0.79
H3F3AP84243 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
H3F3AP84243 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
H3F3AP84243 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
H3F3AP84243 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
H3F3AP84243 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
H3F3AP84243 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC19.95■□□□□ 0.78
H3F3AP84243 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.95■□□□□ 0.78
H3F3AP84243 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.95■□□□□ 0.78
H3F3AP84243 AC099791.2-201ENST00000605725 427 ntBASIC19.95■□□□□ 0.78
H3F3AP84243 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 AL136116.3-201ENST00000402907 1138 ntBASIC19.94■□□□□ 0.78
H3F3AP84243 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.94■□□□□ 0.78
H3F3AP84243 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
H3F3AP84243 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
H3F3AP84243 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
H3F3AP84243 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
H3F3AP84243 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.93■□□□□ 0.78
H3F3AP84243 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.93■□□□□ 0.78
H3F3AP84243 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.93■□□□□ 0.78
H3F3AP84243 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
H3F3AP84243 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.93■□□□□ 0.78
H3F3AP84243 AC092171.4-201ENST00000609130 632 ntBASIC19.93■□□□□ 0.78
H3F3AP84243 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.93■□□□□ 0.78
H3F3AP84243 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.93■□□□□ 0.78
H3F3AP84243 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.93■□□□□ 0.78
H3F3AP84243 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
H3F3AP84243 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
H3F3AP84243 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
H3F3AP84243 AC008406.3-201ENST00000620001 1374 ntBASIC19.93■□□□□ 0.78
H3F3AP84243 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
H3F3AP84243 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
H3F3AP84243 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
H3F3AP84243 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC19.92■□□□□ 0.78
H3F3AP84243 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
H3F3AP84243 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
H3F3AP84243 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.92■□□□□ 0.78
H3F3AP84243 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
H3F3AP84243 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.92■□□□□ 0.78
H3F3AP84243 AL499627.2-201ENST00000606283 725 ntBASIC19.92■□□□□ 0.78
H3F3AP84243 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
H3F3AP84243 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.92■□□□□ 0.78
H3F3AP84243 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.92■□□□□ 0.78
H3F3AP84243 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
H3F3AP84243 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.91■□□□□ 0.78
H3F3AP84243 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.91■□□□□ 0.78
H3F3AP84243 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC19.91■□□□□ 0.78
H3F3AP84243 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.91■□□□□ 0.78
H3F3AP84243 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.91■□□□□ 0.78
H3F3AP84243 AC009086.3-201ENST00000623486 1008 ntBASIC19.91■□□□□ 0.78
H3F3AP84243 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
H3F3AP84243 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.91■□□□□ 0.78
H3F3AP84243 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.91■□□□□ 0.78
H3F3AP84243 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
H3F3AP84243 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
H3F3AP84243 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
H3F3AP84243 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
H3F3AP84243 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.9■□□□□ 0.78
H3F3AP84243 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
H3F3AP84243 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
H3F3AP84243 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.9■□□□□ 0.78
H3F3AP84243 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.9■□□□□ 0.78
H3F3AP84243 DUX4L19-201ENST00000557448 1267 ntBASIC19.9■□□□□ 0.78
H3F3AP84243 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.9■□□□□ 0.78
H3F3AP84243 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.9■□□□□ 0.78
H3F3AP84243 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
H3F3AP84243 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
H3F3AP84243 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms