Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
PEX3P56589 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.64■■□□□ 1.53
PEX3P56589 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.64■■□□□ 1.53
PEX3P56589 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PEX3P56589 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.63■■□□□ 1.53
PEX3P56589 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
PEX3P56589 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.63■■□□□ 1.53
PEX3P56589 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PEX3P56589 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PEX3P56589 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PEX3P56589 AL139246.5-201ENST00000606645 996 ntBASIC24.63■■□□□ 1.53
PEX3P56589 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
PEX3P56589 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC24.63■■□□□ 1.53
PEX3P56589 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
PEX3P56589 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC24.63■■□□□ 1.53
PEX3P56589 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PEX3P56589 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PEX3P56589 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PEX3P56589 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PEX3P56589 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC24.62■■□□□ 1.53
PEX3P56589 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
PEX3P56589 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.62■■□□□ 1.53
PEX3P56589 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.62■■□□□ 1.53
PEX3P56589 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC24.62■■□□□ 1.53
PEX3P56589 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
PEX3P56589 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.61■■□□□ 1.53
PEX3P56589 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PEX3P56589 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PEX3P56589 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC24.61■■□□□ 1.53
PEX3P56589 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC24.61■■□□□ 1.53
PEX3P56589 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PEX3P56589 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
PEX3P56589 PBX2P1-201ENST00000493219 1291 ntBASIC24.61■■□□□ 1.53
PEX3P56589 AC024257.2-201ENST00000549699 147 ntBASIC24.61■■□□□ 1.53
PEX3P56589 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PEX3P56589 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.61■■□□□ 1.53
PEX3P56589 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
PEX3P56589 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC24.6■■□□□ 1.53
PEX3P56589 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
PEX3P56589 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PEX3P56589 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
PEX3P56589 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PEX3P56589 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC24.6■■□□□ 1.53
PEX3P56589 AC135279.3-201ENST00000610945 1311 ntBASIC24.6■■□□□ 1.53
PEX3P56589 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC24.59■■□□□ 1.53
PEX3P56589 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
PEX3P56589 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
PEX3P56589 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PEX3P56589 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.59■■□□□ 1.53
PEX3P56589 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
PEX3P56589 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.59■■□□□ 1.53
PEX3P56589 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC24.59■■□□□ 1.53
PEX3P56589 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.59■■□□□ 1.53
PEX3P56589 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC24.59■■□□□ 1.53
PEX3P56589 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
PEX3P56589 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
PEX3P56589 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
PEX3P56589 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PEX3P56589 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC24.58■■□□□ 1.53
PEX3P56589 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
PEX3P56589 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PEX3P56589 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.58■■□□□ 1.53
PEX3P56589 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.58■■□□□ 1.53
PEX3P56589 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC24.58■■□□□ 1.53
PEX3P56589 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
PEX3P56589 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.58■■□□□ 1.53
PEX3P56589 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
PEX3P56589 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC24.58■■□□□ 1.53
PEX3P56589 AL138724.1-201ENST00000606771 1088 ntBASIC24.58■■□□□ 1.53
PEX3P56589 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
PEX3P56589 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.57■■□□□ 1.52
PEX3P56589 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.57■■□□□ 1.52
PEX3P56589 AL499627.2-201ENST00000606283 725 ntBASIC24.57■■□□□ 1.52
PEX3P56589 AC106739.1-201ENST00000617035 715 ntBASIC24.57■■□□□ 1.52
PEX3P56589 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.57■■□□□ 1.52
PEX3P56589 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC24.56■■□□□ 1.52
PEX3P56589 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.56■■□□□ 1.52
PEX3P56589 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.56■■□□□ 1.52
PEX3P56589 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PEX3P56589 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
PEX3P56589 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
PEX3P56589 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC24.55■■□□□ 1.52
PEX3P56589 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PEX3P56589 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PEX3P56589 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.55■■□□□ 1.52
PEX3P56589 AC011298.3-201ENST00000615796 283 ntBASIC24.55■■□□□ 1.52
PEX3P56589 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.55■■□□□ 1.52
PEX3P56589 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PEX3P56589 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PEX3P56589 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.55■■□□□ 1.52
PEX3P56589 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.55■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms