Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC20.57■□□□□ 0.88
ABCD3P28288 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
ABCD3P28288 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.57■□□□□ 0.88
ABCD3P28288 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.57■□□□□ 0.88
ABCD3P28288 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.57■□□□□ 0.88
ABCD3P28288 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
ABCD3P28288 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.57■□□□□ 0.88
ABCD3P28288 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.57■□□□□ 0.88
ABCD3P28288 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
ABCD3P28288 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
ABCD3P28288 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCD3P28288 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCD3P28288 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.56■□□□□ 0.88
ABCD3P28288 AC096631.2-201ENST00000436136 790 ntBASIC20.56■□□□□ 0.88
ABCD3P28288 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.56■□□□□ 0.88
ABCD3P28288 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCD3P28288 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.56■□□□□ 0.88
ABCD3P28288 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCD3P28288 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ABCD3P28288 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ABCD3P28288 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.55■□□□□ 0.88
ABCD3P28288 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.55■□□□□ 0.88
ABCD3P28288 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCD3P28288 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 SERBP1P1-201ENST00000396021 1160 ntBASIC20.55■□□□□ 0.88
ABCD3P28288 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.55■□□□□ 0.88
ABCD3P28288 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCD3P28288 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.55■□□□□ 0.88
ABCD3P28288 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
ABCD3P28288 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ABCD3P28288 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.55■□□□□ 0.88
ABCD3P28288 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ABCD3P28288 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ABCD3P28288 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
ABCD3P28288 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 UNC93B3-201ENST00000308076 687 ntBASIC20.54■□□□□ 0.88
ABCD3P28288 MIR3181-201ENST00000578512 73 ntBASIC20.54■□□□□ 0.88
ABCD3P28288 pRNA.6-201ENST00000610482 90 ntBASIC20.54■□□□□ 0.88
ABCD3P28288 pRNA.5-201ENST00000612139 90 ntBASIC20.54■□□□□ 0.88
ABCD3P28288 pRNA.11-201ENST00000618423 90 ntBASIC20.54■□□□□ 0.88
ABCD3P28288 pRNA.13-201ENST00000619112 90 ntBASIC20.54■□□□□ 0.88
ABCD3P28288 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCD3P28288 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCD3P28288 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.54■□□□□ 0.88
ABCD3P28288 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ABCD3P28288 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
ABCD3P28288 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.53■□□□□ 0.88
ABCD3P28288 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.53■□□□□ 0.88
ABCD3P28288 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.53■□□□□ 0.88
ABCD3P28288 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
ABCD3P28288 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.53■□□□□ 0.88
ABCD3P28288 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
ABCD3P28288 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.53■□□□□ 0.88
ABCD3P28288 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ABCD3P28288 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.52■□□□□ 0.88
ABCD3P28288 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.52■□□□□ 0.88
ABCD3P28288 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.52■□□□□ 0.88
ABCD3P28288 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 AL138724.1-201ENST00000606771 1088 ntBASIC20.52■□□□□ 0.88
ABCD3P28288 AC110285.6-201ENST00000617652 491 ntBASIC20.52■□□□□ 0.88
ABCD3P28288 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ABCD3P28288 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.52■□□□□ 0.87
ABCD3P28288 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.52■□□□□ 0.87
ABCD3P28288 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
ABCD3P28288 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCD3P28288 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCD3P28288 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ABCD3P28288 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.51■□□□□ 0.87
ABCD3P28288 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 153.3 ms