Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
APOBP04114 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
APOBP04114 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC14.19□□□□□ -0.14
APOBP04114 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC14.19□□□□□ -0.14
APOBP04114 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC14.19□□□□□ -0.14
APOBP04114 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
APOBP04114 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
APOBP04114 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
APOBP04114 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC14.19□□□□□ -0.14
APOBP04114 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
APOBP04114 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
APOBP04114 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
APOBP04114 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
APOBP04114 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC14.18□□□□□ -0.14
APOBP04114 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC14.18□□□□□ -0.14
APOBP04114 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.18□□□□□ -0.14
APOBP04114 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
APOBP04114 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
APOBP04114 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
APOBP04114 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
APOBP04114 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
APOBP04114 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
APOBP04114 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
APOBP04114 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC14.18□□□□□ -0.14
APOBP04114 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
APOBP04114 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
APOBP04114 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
APOBP04114 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC14.17□□□□□ -0.14
APOBP04114 AC093827.2-201ENST00000512654 315 ntBASIC14.17□□□□□ -0.14
APOBP04114 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
APOBP04114 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
APOBP04114 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC14.17□□□□□ -0.14
APOBP04114 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC14.17□□□□□ -0.14
APOBP04114 PARP1-210ENST00000629232 477 ntTSL 5 BASIC14.17□□□□□ -0.14
APOBP04114 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 AC141586.4-201ENST00000624558 1573 ntBASIC14.17□□□□□ -0.14
APOBP04114 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
APOBP04114 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC14.16□□□□□ -0.14
APOBP04114 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC14.16□□□□□ -0.14
APOBP04114 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
APOBP04114 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC14.16□□□□□ -0.14
APOBP04114 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC14.16□□□□□ -0.14
APOBP04114 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC14.16□□□□□ -0.14
APOBP04114 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
APOBP04114 AC098934.4-201ENST00000564127 592 ntBASIC14.16□□□□□ -0.14
APOBP04114 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC14.16□□□□□ -0.14
APOBP04114 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
APOBP04114 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
APOBP04114 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
APOBP04114 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC14.15□□□□□ -0.14
APOBP04114 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.15□□□□□ -0.14
APOBP04114 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
APOBP04114 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
APOBP04114 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
APOBP04114 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC14.15□□□□□ -0.14
APOBP04114 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
APOBP04114 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC14.15□□□□□ -0.14
APOBP04114 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC14.15□□□□□ -0.15
APOBP04114 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
APOBP04114 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 SHF-206ENST00000560471 2499 ntTSL 5 BASIC14.14□□□□□ -0.15
APOBP04114 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
APOBP04114 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
APOBP04114 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
APOBP04114 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
APOBP04114 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
APOBP04114 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
APOBP04114 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.14□□□□□ -0.15
APOBP04114 AC105233.4-201ENST00000642045 216 ntBASIC14.14□□□□□ -0.15
APOBP04114 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC14.14□□□□□ -0.15
APOBP04114 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 AP004607.4-201ENST00000530158 1459 ntBASIC14.14□□□□□ -0.15
APOBP04114 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
APOBP04114 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
APOBP04114 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC14.14□□□□□ -0.15
APOBP04114 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
APOBP04114 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC14.13□□□□□ -0.15
APOBP04114 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
APOBP04114 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
APOBP04114 AC069152.1-201ENST00000438030 544 ntBASIC14.13□□□□□ -0.15
APOBP04114 DET1-205ENST00000558413 583 ntTSL 4 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms