Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC22.8■■□□□ 1.24
PDGFBP01127 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PDGFBP01127 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.79■■□□□ 1.24
PDGFBP01127 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PDGFBP01127 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PDGFBP01127 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.79■■□□□ 1.24
PDGFBP01127 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.79■■□□□ 1.24
PDGFBP01127 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.79■■□□□ 1.24
PDGFBP01127 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.79■■□□□ 1.24
PDGFBP01127 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.79■■□□□ 1.24
PDGFBP01127 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PDGFBP01127 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC22.78■■□□□ 1.24
PDGFBP01127 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
PDGFBP01127 METTL26-203ENST00000397664 604 ntTSL 2 BASIC22.78■■□□□ 1.24
PDGFBP01127 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC22.78■■□□□ 1.24
PDGFBP01127 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
PDGFBP01127 AC142086.6-201ENST00000621154 1765 ntBASIC22.78■■□□□ 1.24
PDGFBP01127 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.77■■□□□ 1.24
PDGFBP01127 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.77■■□□□ 1.24
PDGFBP01127 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
PDGFBP01127 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC22.76■■□□□ 1.23
PDGFBP01127 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC22.76■■□□□ 1.23
PDGFBP01127 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 MFF-208ENST00000409616 1247 ntTSL 5 BASIC22.76■■□□□ 1.23
PDGFBP01127 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.76■■□□□ 1.23
PDGFBP01127 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.76■■□□□ 1.23
PDGFBP01127 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.76■■□□□ 1.23
PDGFBP01127 DUX4L4-201ENST00000566884 1269 ntBASIC22.76■■□□□ 1.23
PDGFBP01127 MIR6089-201ENST00000616698 64 ntBASIC22.76■■□□□ 1.23
PDGFBP01127 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.76■■□□□ 1.23
PDGFBP01127 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.76■■□□□ 1.23
PDGFBP01127 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC22.76■■□□□ 1.23
PDGFBP01127 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.76■■□□□ 1.23
PDGFBP01127 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PDGFBP01127 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PDGFBP01127 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PDGFBP01127 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.75■■□□□ 1.23
PDGFBP01127 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.75■■□□□ 1.23
PDGFBP01127 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.75■■□□□ 1.23
PDGFBP01127 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC22.75■■□□□ 1.23
PDGFBP01127 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PDGFBP01127 AL050303.2-201ENST00000619798 666 ntBASIC22.75■■□□□ 1.23
PDGFBP01127 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
PDGFBP01127 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PDGFBP01127 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC22.74■■□□□ 1.23
PDGFBP01127 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PDGFBP01127 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PDGFBP01127 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PDGFBP01127 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PDGFBP01127 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC22.74■■□□□ 1.23
PDGFBP01127 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
PDGFBP01127 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PDGFBP01127 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PDGFBP01127 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.73■■□□□ 1.23
PDGFBP01127 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PDGFBP01127 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PDGFBP01127 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.73■■□□□ 1.23
PDGFBP01127 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.73■■□□□ 1.23
PDGFBP01127 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC22.73■■□□□ 1.23
PDGFBP01127 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 KRT19P1-201ENST00000405746 1186 ntBASIC22.72■■□□□ 1.23
PDGFBP01127 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 AC008687.6-201ENST00000596318 630 ntBASIC22.72■■□□□ 1.23
PDGFBP01127 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PDGFBP01127 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.72■■□□□ 1.23
PDGFBP01127 CD37-213ENST00000598095 1598 ntTSL 2 BASIC22.72■■□□□ 1.23
PDGFBP01127 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFBP01127 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFBP01127 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.71■■□□□ 1.23
PDGFBP01127 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFBP01127 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.71■■□□□ 1.23
PDGFBP01127 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC22.71■■□□□ 1.23
PDGFBP01127 AL138781.1-201ENST00000566567 1274 ntBASIC22.71■■□□□ 1.23
PDGFBP01127 ARL16-209ENST00000573715 763 ntTSL 3 BASIC22.71■■□□□ 1.23
PDGFBP01127 ARL16-211ENST00000576135 694 ntTSL 3 BASIC22.71■■□□□ 1.23
PDGFBP01127 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PDGFBP01127 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC22.71■■□□□ 1.23
PDGFBP01127 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC22.71■■□□□ 1.23
PDGFBP01127 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
PDGFBP01127 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.7■■□□□ 1.22
PDGFBP01127 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 TSPY6P-201ENST00000448518 926 ntBASIC22.7■■□□□ 1.22
PDGFBP01127 AC083906.2-201ENST00000511578 360 ntBASIC22.7■■□□□ 1.22
PDGFBP01127 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PDGFBP01127 AL121832.2-201ENST00000610979 668 ntBASIC22.7■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms