Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGN4O00479 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
HMGN4O00479 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.79■□□□□ 0.92
HMGN4O00479 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.79■□□□□ 0.92
HMGN4O00479 KRT125P-201ENST00000546827 989 ntBASIC20.79■□□□□ 0.92
HMGN4O00479 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HMGN4O00479 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
HMGN4O00479 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
HMGN4O00479 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HMGN4O00479 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HMGN4O00479 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGN4O00479 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGN4O00479 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.78■□□□□ 0.92
HMGN4O00479 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HMGN4O00479 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.78■□□□□ 0.92
HMGN4O00479 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HMGN4O00479 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
HMGN4O00479 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGN4O00479 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGN4O00479 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGN4O00479 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.77■□□□□ 0.92
HMGN4O00479 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
HMGN4O00479 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
HMGN4O00479 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.77■□□□□ 0.92
HMGN4O00479 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.77■□□□□ 0.92
HMGN4O00479 ESRRAP2-201ENST00000418437 1549 ntBASIC20.77■□□□□ 0.92
HMGN4O00479 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
HMGN4O00479 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HMGN4O00479 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGN4O00479 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGN4O00479 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.76■□□□□ 0.91
HMGN4O00479 MIR4787-201ENST00000607364 84 ntBASIC20.76■□□□□ 0.91
HMGN4O00479 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGN4O00479 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.76■□□□□ 0.91
HMGN4O00479 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HMGN4O00479 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGN4O00479 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HMGN4O00479 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
HMGN4O00479 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGN4O00479 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.75■□□□□ 0.91
HMGN4O00479 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HMGN4O00479 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 AC239859.2-201ENST00000444165 318 ntBASIC20.74■□□□□ 0.91
HMGN4O00479 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGN4O00479 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HMGN4O00479 LINC01529-204ENST00000636474 1715 ntBASIC20.74■□□□□ 0.91
HMGN4O00479 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.74■□□□□ 0.91
HMGN4O00479 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
HMGN4O00479 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
HMGN4O00479 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HMGN4O00479 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
HMGN4O00479 ECEL1P1-201ENST00000373592 1742 ntBASIC20.73■□□□□ 0.91
HMGN4O00479 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGN4O00479 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGN4O00479 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HMGN4O00479 AC009299.2-201ENST00000482477 511 ntBASIC20.73■□□□□ 0.91
HMGN4O00479 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGN4O00479 MTDHP2-201ENST00000601468 714 ntBASIC20.73■□□□□ 0.91
HMGN4O00479 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
HMGN4O00479 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGN4O00479 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HMGN4O00479 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGN4O00479 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HMGN4O00479 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.73■□□□□ 0.91
HMGN4O00479 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.72■□□□□ 0.91
HMGN4O00479 FP325331.1-202ENST00000623531 1380 ntBASIC20.72■□□□□ 0.91
HMGN4O00479 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.72■□□□□ 0.91
HMGN4O00479 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HMGN4O00479 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
HMGN4O00479 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms