Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
TRAV27A0A087WT01 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRAV27A0A087WT01 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV27A0A087WT01 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV27A0A087WT01 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.19■□□□□ 0.82
TRAV27A0A087WT01 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.19■□□□□ 0.82
TRAV27A0A087WT01 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRAV27A0A087WT01 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.18■□□□□ 0.82
TRAV27A0A087WT01 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.17■□□□□ 0.82
TRAV27A0A087WT01 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 BX664725.1-201ENST00000438252 379 ntBASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 AC021242.3-201ENST00000607598 1377 ntBASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 AC144652.1-201ENST00000609974 1624 ntBASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.16■□□□□ 0.82
TRAV27A0A087WT01 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.15■□□□□ 0.82
TRAV27A0A087WT01 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
TRAV27A0A087WT01 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 LINC00526-201ENST00000581067 1875 ntBASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 LINC00565-201ENST00000562710 2331 ntBASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.14■□□□□ 0.81
TRAV27A0A087WT01 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 AC005703.6-201ENST00000623265 1329 ntBASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
TRAV27A0A087WT01 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms