Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AC139713.2-207ENST00000641556 1292 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AL008638.4-201ENST00000624792 1315 ntBASIC13.33□□□□□ -0.28
COL28A1Q2UY09 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 WARS-203ENST00000358655 2466 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
COL28A1Q2UY09 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 PRMT3-202ENST00000331079 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 RSBN1-201ENST00000261441 6621 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 NRADDP-201ENST00000437305 691 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 TMEM222-203ENST00000464813 1071 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AC108724.1-201ENST00000481669 352 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 EXTL3-AS1-203ENST00000520023 780 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 KRT18P37-201ENST00000520711 1282 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AC078814.4-201ENST00000546650 327 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AC124068.2-201ENST00000569473 1109 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 GGNBP1-204ENST00000613113 887 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 MIR6893-201ENST00000613458 69 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CES1P1-201ENST00000421606 1704 ntBASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
COL28A1Q2UY09 AC012617.1-204ENST00000586340 2305 ntBASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
COL28A1Q2UY09 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms