Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 HSD3B2-206ENST00000543831 1783 ntAPPRIS P1 TSL 3 BASIC13.03□□□□□ -0.32
RAE1P78406 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC13.03□□□□□ -0.32
RAE1P78406 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
RAE1P78406 DKKL1P1-201ENST00000400550 698 ntBASIC13.03□□□□□ -0.32
RAE1P78406 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 AL512306.1-201ENST00000432698 848 ntBASIC13.03□□□□□ -0.32
RAE1P78406 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 AC018638.5-201ENST00000450885 754 ntBASIC13.03□□□□□ -0.32
RAE1P78406 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
RAE1P78406 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
RAE1P78406 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC13.03□□□□□ -0.32
RAE1P78406 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC13.03□□□□□ -0.32
RAE1P78406 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC13.03□□□□□ -0.32
RAE1P78406 NAA38-204ENST00000575208 529 ntTSL 3 BASIC13.03□□□□□ -0.32
RAE1P78406 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC13.03□□□□□ -0.32
RAE1P78406 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 AP005264.5-201ENST00000590066 467 ntBASIC13.03□□□□□ -0.32
RAE1P78406 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC13.03□□□□□ -0.32
RAE1P78406 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 PPM1K-201ENST00000295908 1940 ntTSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 CLASP2-218ENST00000487200 1940 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 C2-209ENST00000452323 1999 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 DPP8-201ENST00000300141 3139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 HAL-202ENST00000538703 2637 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
RAE1P78406 SLC35F2-203ENST00000525071 3331 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
RAE1P78406 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC13.03□□□□□ -0.32
RAE1P78406 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 FARS2-201ENST00000274680 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 MAP7-202ENST00000432797 4375 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
RAE1P78406 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
RAE1P78406 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
RAE1P78406 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 BISPR-204ENST00000634675 1806 ntTSL 2 BASIC13.02□□□□□ -0.32
RAE1P78406 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
RAE1P78406 HSPA8P9-201ENST00000485881 1943 ntBASIC13.02□□□□□ -0.32
RAE1P78406 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.32
RAE1P78406 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 PRKN-205ENST00000366897 2877 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 OR2W2P-201ENST00000406313 909 ntBASIC13.02□□□□□ -0.33
RAE1P78406 RN7SL564P-201ENST00000496309 250 ntBASIC13.02□□□□□ -0.33
RAE1P78406 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.02□□□□□ -0.33
RAE1P78406 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.02□□□□□ -0.33
RAE1P78406 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.02□□□□□ -0.33
RAE1P78406 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC13.02□□□□□ -0.33
RAE1P78406 MIR4522-201ENST00000584932 87 ntBASIC13.02□□□□□ -0.33
RAE1P78406 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC13.02□□□□□ -0.33
RAE1P78406 AC006453.1-201ENST00000636037 1257 ntBASIC13.02□□□□□ -0.33
RAE1P78406 AC138627.1-207ENST00000641560 1006 ntBASIC13.02□□□□□ -0.33
RAE1P78406 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC13.02□□□□□ -0.33
RAE1P78406 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
RAE1P78406 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
RAE1P78406 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
RAE1P78406 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC13.02□□□□□ -0.33
RAE1P78406 GTF2F1-201ENST00000394456 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
RAE1P78406 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 ZSCAN32-203ENST00000396852 3169 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
RAE1P78406 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
RAE1P78406 INHBC-201ENST00000309668 1992 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
RAE1P78406 C17orf80-202ENST00000268942 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
RAE1P78406 EPS8L3-201ENST00000361852 2130 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
RAE1P78406 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms