Protein–RNA interactions for Protein: P56159

GFRA1, GDNF family receptor alpha-1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA1P56159 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC12.29□□□□□ -0.44
GFRA1P56159 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
GFRA1P56159 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
GFRA1P56159 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
GFRA1P56159 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
GFRA1P56159 PTENP1-202ENST00000532280 3996 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 STK25-235ENST00000543554 2556 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 AC135782.3-201ENST00000562782 2105 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 AC107918.4-201ENST00000641966 3141 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC12.28□□□□□ -0.44
GFRA1P56159 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC12.28□□□□□ -0.44
GFRA1P56159 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC12.28□□□□□ -0.44
GFRA1P56159 RN7SL396P-201ENST00000471086 295 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 AC104212.2-201ENST00000478813 628 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 RN7SL582P-201ENST00000491078 279 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC12.28□□□□□ -0.44
GFRA1P56159 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 USB1-205ENST00000561743 1135 ntTSL 3 BASIC12.28□□□□□ -0.44
GFRA1P56159 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC12.28□□□□□ -0.44
GFRA1P56159 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC12.28□□□□□ -0.44
GFRA1P56159 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 AC073869.4-201ENST00000620841 800 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 AC126755.5-201ENST00000622756 267 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 AC127024.7-201ENST00000625101 200 ntBASIC12.28□□□□□ -0.44
GFRA1P56159 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC12.28□□□□□ -0.44
GFRA1P56159 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
GFRA1P56159 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC12.28□□□□□ -0.44
GFRA1P56159 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
GFRA1P56159 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
GFRA1P56159 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC12.27□□□□□ -0.44
GFRA1P56159 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
GFRA1P56159 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC12.27□□□□□ -0.44
GFRA1P56159 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
GFRA1P56159 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.27□□□□□ -0.44
GFRA1P56159 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
GFRA1P56159 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.27□□□□□ -0.44
GFRA1P56159 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.44
GFRA1P56159 AGAP12P-201ENST00000585227 2359 ntBASIC12.27□□□□□ -0.44
GFRA1P56159 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.44
GFRA1P56159 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
GFRA1P56159 ST20-AS1-201ENST00000560255 4223 ntBASIC12.27□□□□□ -0.45
GFRA1P56159 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.27□□□□□ -0.45
GFRA1P56159 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
GFRA1P56159 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
GFRA1P56159 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
GFRA1P56159 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
GFRA1P56159 KRT18P4-201ENST00000422599 1288 ntBASIC12.27□□□□□ -0.45
GFRA1P56159 AP000244.1-201ENST00000424582 201 ntBASIC12.27□□□□□ -0.45
GFRA1P56159 AQP7P5-201ENST00000428759 1049 ntBASIC12.27□□□□□ -0.45
GFRA1P56159 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC12.27□□□□□ -0.45
GFRA1P56159 ASS1P2-201ENST00000439895 1223 ntBASIC12.27□□□□□ -0.45
GFRA1P56159 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC12.27□□□□□ -0.45
GFRA1P56159 AQP7P4-201ENST00000447083 1042 ntBASIC12.27□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms