Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 SH3KBP1-202ENST00000379698 2678 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 RN7SL455P-201ENST00000580629 282 ntBASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 AP000346.4-201ENST00000614827 381 ntBASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 CIZ1-205ENST00000372948 2858 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 PTPRVP-205ENST00000641549 5067 ntBASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CCDC28BQ9BUN5 ZNF502-203ENST00000436624 2314 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 POU2F2-202ENST00000389341 6901 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 PNPLA8-208ENST00000453144 3366 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 MPP4-203ENST00000396886 2250 ntTSL 2 BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CCDC28BQ9BUN5 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 RGS12-204ENST00000382788 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 PTGR2-204ENST00000555228 2543 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC079178.1-201ENST00000420915 656 ntBASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AL354877.1-201ENST00000424412 413 ntBASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 POLE2-203ENST00000553805 496 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AL096865.1-201ENST00000606796 927 ntBASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC091271.1-201ENST00000611877 1162 ntBASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC244157.2-201ENST00000616239 1006 ntBASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 CAST-223ENST00000508608 2425 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 ZNF771-204ENST00000566625 2415 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 NRP2-202ENST00000357118 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 SP7-201ENST00000303846 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC008132.1-202ENST00000342005 1389 ntBASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 AC002550.1-201ENST00000565916 1379 ntTSL 5 BASIC13.45□□□□□ -0.26
CCDC28BQ9BUN5 NAA60-214ENST00000572584 2450 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms