Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIR6746-201ENST00000620971 63 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 AC126755.5-201ENST00000622756 267 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 AL451007.2-201ENST00000632004 563 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC15.69■□□□□ 0.1
SMARCA1P28370 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 LINC00846-201ENST00000334165 1778 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 AC007336.3-201ENST00000623886 2160 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 OR8J1-202ENST00000533152 1320 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SMARCA1P28370 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 HNRNPLP1-201ENST00000421896 1501 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 TPPP3-205ENST00000564104 1736 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SMARCA1P28370 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 ALG6-202ENST00000371108 3371 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC15.68■□□□□ 0.1
SMARCA1P28370 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 GOLGA8A-201ENST00000359187 1877 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 GABRR2-201ENST00000402938 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SMARCA1P28370 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC15.68■□□□□ 0.1
SMARCA1P28370 STK16-203ENST00000409516 895 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC15.68■□□□□ 0.1
SMARCA1P28370 AP000244.1-201ENST00000424582 201 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SMARCA1P28370 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 AC090136.2-201ENST00000517809 420 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC15.68■□□□□ 0.1
SMARCA1P28370 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 MIR4472-1-201ENST00000584349 80 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 AC011247.3-201ENST00000603297 438 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SMARCA1P28370 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC15.68■□□□□ 0.1
SMARCA1P28370 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 AC002350.2-201ENST00000623894 1828 ntBASIC15.68■□□□□ 0.1
SMARCA1P28370 HNRNPL-210ENST00000600873 1633 ntTSL 5 BASIC15.68■□□□□ 0.1
SMARCA1P28370 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC15.68■□□□□ 0.1
SMARCA1P28370 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
SMARCA1P28370 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC15.68■□□□□ 0.1
SMARCA1P28370 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
SMARCA1P28370 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMARCA1P28370 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 MKRN5P-201ENST00000445263 1467 ntBASIC15.67■□□□□ 0.1
SMARCA1P28370 ATP6V1C1-205ENST00000521514 1484 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SMARCA1P28370 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 NDUFB6-202ENST00000366466 761 ntTSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 RHOC-205ENST00000369636 786 ntTSL 2 BASIC15.67■□□□□ 0.1
SMARCA1P28370 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC15.67■□□□□ 0.1
SMARCA1P28370 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 ASS1P2-201ENST00000439895 1223 ntBASIC15.67■□□□□ 0.1
SMARCA1P28370 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SMARCA1P28370 IL2RG-204ENST00000456850 540 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMARCA1P28370 RN7SL128P-201ENST00000467883 305 ntBASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms