Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AC021218.1-201ENST00000377722 2536 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 DGCR5-203ENST00000438934 5492 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 KANK4-201ENST00000317477 2080 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 PNPLA6-204ENST00000545201 4502 ntTSL 2 BASIC15.58■□□□□ 0.08
TPM4P67936 CCDC187-204ENST00000624277 3918 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.08
TPM4P67936 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TPM4P67936 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 GPC4-201ENST00000370828 4960 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 SLC26A6-202ENST00000337000 2317 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 COL4A6-209ENST00000545689 6380 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 SRPK3-208ENST00000489426 4479 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 C16orf62-215ENST00000542263 3138 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC15.57■□□□□ 0.08
TPM4P67936 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 MYCBP-201ENST00000397572 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 AL645937.6-201ENST00000641122 3727 ntBASIC15.57■□□□□ 0.08
TPM4P67936 FBXW8-202ENST00000455858 4648 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 AC098614.1-201ENST00000368528 745 ntBASIC15.57■□□□□ 0.08
TPM4P67936 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.57■□□□□ 0.08
TPM4P67936 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC15.57■□□□□ 0.08
TPM4P67936 PARVG-202ENST00000415224 999 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC15.57■□□□□ 0.08
TPM4P67936 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC15.57■□□□□ 0.08
TPM4P67936 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 RN7SL752P-201ENST00000463779 287 ntBASIC15.57■□□□□ 0.08
TPM4P67936 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.57■□□□□ 0.08
TPM4P67936 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC15.57■□□□□ 0.08
TPM4P67936 AC005962.1-201ENST00000584100 773 ntBASIC15.57■□□□□ 0.08
TPM4P67936 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC15.57■□□□□ 0.08
TPM4P67936 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
TPM4P67936 AL161773.1-201ENST00000624845 863 ntBASIC15.57■□□□□ 0.08
TPM4P67936 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
TPM4P67936 PIGG-217ENST00000509768 3121 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 TMEM56-201ENST00000370203 6822 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 AC012435.1-201ENST00000563287 3385 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 WNK1-202ENST00000340908 11208 ntTSL 5 BASIC15.57■□□□□ 0.08
TPM4P67936 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC15.57■□□□□ 0.08
TPM4P67936 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 AC027369.3-201ENST00000530465 3707 ntBASIC15.57■□□□□ 0.08
TPM4P67936 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC15.57■□□□□ 0.08
TPM4P67936 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 BTBD3-204ENST00000405977 5137 ntAPPRIS P4 TSL 5 BASIC15.57■□□□□ 0.08
TPM4P67936 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 ELOVL4-201ENST00000369816 3042 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
TPM4P67936 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC15.57■□□□□ 0.08
TPM4P67936 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 C10orf105-202ENST00000441508 4836 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC15.56■□□□□ 0.08
TPM4P67936 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 SH2D5-201ENST00000375031 3705 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 RAB37-204ENST00000392613 2617 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 PLPP6-201ENST00000381883 2944 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TPM4P67936 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 OR1I1-202ENST00000641398 5984 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
TPM4P67936 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 SSR4P1-201ENST00000415143 412 ntBASIC15.56■□□□□ 0.08
TPM4P67936 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 HLA-V-201ENST00000429037 534 ntBASIC15.56■□□□□ 0.08
TPM4P67936 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.56■□□□□ 0.08
TPM4P67936 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC15.56■□□□□ 0.08
TPM4P67936 FUZ-207ENST00000526575 482 ntTSL 4 BASIC15.56■□□□□ 0.08
TPM4P67936 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
TPM4P67936 CR383656.12-201ENST00000549567 513 ntBASIC15.56■□□□□ 0.08
TPM4P67936 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.56■□□□□ 0.08
TPM4P67936 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 APRT-204ENST00000563655 709 ntTSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC15.56■□□□□ 0.08
TPM4P67936 ZBTB44-202ENST00000397753 3951 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
TPM4P67936 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms