Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 SH3TC1-201ENST00000245105 4226 ntAPPRIS P1 TSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 AC144522.1-201ENST00000625111 1658 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 AC020917.4-201ENST00000623994 1999 ntBASIC11.86□□□□□ -0.51
SDCBPO00560 CD300LB-202ENST00000392621 2286 ntAPPRIS P2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 DNMT3B-206ENST00000456297 2315 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC11.86□□□□□ -0.51
SDCBPO00560 AC003986.1-201ENST00000452700 1526 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
SDCBPO00560 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC11.86□□□□□ -0.51
SDCBPO00560 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 FAM214B-205ENST00000488109 2999 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
SDCBPO00560 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 MARCH3-201ENST00000308660 4196 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 CDC14B-201ENST00000375240 2547 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 PSMD12-201ENST00000356126 4406 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
SDCBPO00560 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC11.85□□□□□ -0.51
SDCBPO00560 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC11.85□□□□□ -0.51
SDCBPO00560 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC11.85□□□□□ -0.51
SDCBPO00560 TUBB8P8-201ENST00000458717 1058 ntBASIC11.85□□□□□ -0.51
SDCBPO00560 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC11.85□□□□□ -0.51
SDCBPO00560 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC11.85□□□□□ -0.51
SDCBPO00560 ATP6V0CP2-201ENST00000469409 207 ntBASIC11.85□□□□□ -0.51
SDCBPO00560 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC11.85□□□□□ -0.51
SDCBPO00560 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
SDCBPO00560 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 IGHV3-71-201ENST00000523324 359 ntBASIC11.85□□□□□ -0.51
SDCBPO00560 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC11.85□□□□□ -0.51
SDCBPO00560 AC008805.1-201ENST00000590892 364 ntBASIC11.85□□□□□ -0.51
SDCBPO00560 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC11.85□□□□□ -0.51
SDCBPO00560 AC090386.2-201ENST00000623010 1039 ntBASIC11.85□□□□□ -0.51
SDCBPO00560 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC11.85□□□□□ -0.51
SDCBPO00560 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
SDCBPO00560 GOLGA2P5-201ENST00000266746 2395 ntBASIC11.85□□□□□ -0.51
SDCBPO00560 SLC44A1-202ENST00000374723 9640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC11.85□□□□□ -0.51
SDCBPO00560 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC11.85□□□□□ -0.51
SDCBPO00560 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC11.85□□□□□ -0.51
SDCBPO00560 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC11.85□□□□□ -0.51
SDCBPO00560 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
SDCBPO00560 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
SDCBPO00560 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
SDCBPO00560 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC11.84□□□□□ -0.51
SDCBPO00560 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 CYB561-202ENST00000392975 3007 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC11.84□□□□□ -0.51
SDCBPO00560 GRAMD1B-216ENST00000638157 3849 ntTSL 5 BASIC11.84□□□□□ -0.51
SDCBPO00560 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
SDCBPO00560 NCBP1-202ENST00000375147 5178 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC11.84□□□□□ -0.51
SDCBPO00560 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC11.84□□□□□ -0.51
SDCBPO00560 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC11.84□□□□□ -0.51
SDCBPO00560 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
SDCBPO00560 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC11.84□□□□□ -0.51
SDCBPO00560 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
SDCBPO00560 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms