Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC13.11□□□□□ -0.31
RAE1P78406 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
RAE1P78406 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13.11□□□□□ -0.31
RAE1P78406 USP49-201ENST00000373006 3177 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 UBE2W-201ENST00000419880 2315 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC13.11□□□□□ -0.31
RAE1P78406 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 ADCY3-202ENST00000405392 4397 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
RAE1P78406 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC13.1□□□□□ -0.31
RAE1P78406 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC13.1□□□□□ -0.31
RAE1P78406 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 CAP2P1-201ENST00000557743 1390 ntBASIC13.1□□□□□ -0.31
RAE1P78406 AMHR2-204ENST00000550311 1787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 AC006372.4-201ENST00000624122 1543 ntBASIC13.1□□□□□ -0.31
RAE1P78406 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC13.1□□□□□ -0.31
RAE1P78406 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC13.1□□□□□ -0.31
RAE1P78406 MOCS1-207ENST00000432280 1071 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 Z97180.1-201ENST00000445173 988 ntBASIC13.1□□□□□ -0.31
RAE1P78406 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.1□□□□□ -0.31
RAE1P78406 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.1□□□□□ -0.31
RAE1P78406 AC005077.3-201ENST00000449614 213 ntBASIC13.1□□□□□ -0.31
RAE1P78406 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC13.1□□□□□ -0.31
RAE1P78406 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 NUP210P1-202ENST00000504322 710 ntBASIC13.1□□□□□ -0.31
RAE1P78406 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.1□□□□□ -0.31
RAE1P78406 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 RTN3P1-201ENST00000536295 711 ntBASIC13.1□□□□□ -0.31
RAE1P78406 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
RAE1P78406 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.1□□□□□ -0.31
RAE1P78406 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC13.1□□□□□ -0.31
RAE1P78406 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 AC007718.1-201ENST00000621078 280 ntBASIC13.1□□□□□ -0.31
RAE1P78406 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 PPP1R26P2-201ENST00000611403 3595 ntBASIC13.1□□□□□ -0.31
RAE1P78406 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC13.1□□□□□ -0.31
RAE1P78406 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 ANXA11-201ENST00000265447 2526 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 PTPN5-205ENST00000477854 2826 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 DPAGT1-217ENST00000639704 1719 ntTSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 AC019109.1-201ENST00000401725 1874 ntBASIC13.1□□□□□ -0.31
RAE1P78406 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 RBM15-204ENST00000617047 3284 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 TEKT4P2-202ENST00000559466 1312 ntBASIC13.1□□□□□ -0.31
RAE1P78406 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 IL19-201ENST00000270218 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
RAE1P78406 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC13.1□□□□□ -0.31
RAE1P78406 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC13.09□□□□□ -0.31
RAE1P78406 COBL-205ENST00000441453 3785 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
RAE1P78406 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
RAE1P78406 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
RAE1P78406 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
RAE1P78406 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RAE1P78406 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms