Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 LINC01257-201ENST00000376678 2473 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 UFM1-202ENST00000379649 846 ntTSL 4 BASIC13.12□□□□□ -0.31
SOX3P41225 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 USP17L6P-201ENST00000382470 1197 ntBASIC13.12□□□□□ -0.31
SOX3P41225 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC13.12□□□□□ -0.31
SOX3P41225 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 AC019193.1-201ENST00000506678 823 ntBASIC13.12□□□□□ -0.31
SOX3P41225 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC13.12□□□□□ -0.31
SOX3P41225 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC13.12□□□□□ -0.31
SOX3P41225 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC13.12□□□□□ -0.31
SOX3P41225 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
SOX3P41225 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 MARK2P16-201ENST00000605714 1723 ntBASIC13.12□□□□□ -0.31
SOX3P41225 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 C21orf59-203ENST00000382549 2503 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.12□□□□□ -0.31
SOX3P41225 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC13.12□□□□□ -0.31
SOX3P41225 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
SOX3P41225 PCDHA5-203ENST00000614258 4248 ntBASIC13.12□□□□□ -0.31
SOX3P41225 PPFIA4-203ENST00000367240 6434 ntAPPRIS P5 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 AC125807.2-201ENST00000513358 3514 ntBASIC13.11□□□□□ -0.31
SOX3P41225 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 AL592076.1-201ENST00000424448 303 ntBASIC13.11□□□□□ -0.31
SOX3P41225 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC13.11□□□□□ -0.31
SOX3P41225 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 SIGLEC18P-201ENST00000602271 909 ntBASIC13.11□□□□□ -0.31
SOX3P41225 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC13.11□□□□□ -0.31
SOX3P41225 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC13.11□□□□□ -0.31
SOX3P41225 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
SOX3P41225 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
SOX3P41225 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms