Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.73□□□□□ -0.21
COL6A2P12110 MARK2P5-201ENST00000507649 634 ntBASIC13.73□□□□□ -0.21
COL6A2P12110 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 CSH2-206ENST00000560142 749 ntTSL 5 BASIC13.73□□□□□ -0.21
COL6A2P12110 ELP5-212ENST00000574255 671 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC13.73□□□□□ -0.21
COL6A2P12110 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 AC133552.6-201ENST00000613406 534 ntBASIC13.73□□□□□ -0.21
COL6A2P12110 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 ZFYVE19-202ENST00000336455 1784 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 SEC13-203ENST00000383801 1479 ntTSL 2 BASIC13.73□□□□□ -0.21
COL6A2P12110 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
COL6A2P12110 PCDHB19P-202ENST00000625133 2914 ntBASIC13.73□□□□□ -0.21
COL6A2P12110 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A2P12110 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
COL6A2P12110 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
COL6A2P12110 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL6A2P12110 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 BX324167.2-201ENST00000623717 3316 ntBASIC13.72□□□□□ -0.21
COL6A2P12110 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A2P12110 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A2P12110 GOLGA2P4-201ENST00000441462 777 ntBASIC13.72□□□□□ -0.21
COL6A2P12110 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A2P12110 FAM86HP-204ENST00000513466 959 ntBASIC13.72□□□□□ -0.21
COL6A2P12110 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A2P12110 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.72□□□□□ -0.21
COL6A2P12110 AC009542.2-202ENST00000619004 1067 ntBASIC13.72□□□□□ -0.21
COL6A2P12110 COX11-210ENST00000639671 696 ntBASIC13.72□□□□□ -0.21
COL6A2P12110 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 RCC2P5-201ENST00000492126 1487 ntBASIC13.72□□□□□ -0.21
COL6A2P12110 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 PPT1-204ENST00000439754 2195 ntTSL 3 BASIC13.72□□□□□ -0.21
COL6A2P12110 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 DCAF5-209ENST00000557386 2883 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 AL355336.1-201ENST00000451355 1676 ntTSL 2 BASIC13.72□□□□□ -0.21
COL6A2P12110 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL6A2P12110 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC13.72□□□□□ -0.21
COL6A2P12110 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 PTPRH-202ENST00000376350 3877 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A2P12110 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 PFKM-201ENST00000312352 3078 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 SLC4A2-201ENST00000392826 3947 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
COL6A2P12110 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC13.71□□□□□ -0.21
COL6A2P12110 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 AC016738.1-201ENST00000452364 3485 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL6A2P12110 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL6A2P12110 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms