Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 AC015656.1-201ENST00000624209 3578 ntBASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 AC023794.5-201ENST00000564380 2157 ntBASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 AC106872.9-201ENST00000512437 1393 ntBASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 ZNRD1-204ENST00000376785 754 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 AP001331.1-201ENST00000413008 1015 ntBASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 NAT9-204ENST00000578822 839 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 AGAP10P-201ENST00000454844 2418 ntBASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 DDC-212ENST00000615193 1674 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC88AQ3V6T2 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 CDK7-201ENST00000256443 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 PLEKHG6-202ENST00000304581 1424 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 SNX18-202ENST00000343017 3140 ntBASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 LSM2-208ENST00000375661 876 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 NOS2P3-201ENST00000411468 867 ntBASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 NOS2P2-201ENST00000426269 867 ntBASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 AK2-208ENST00000487289 920 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 DIS3L2P1-201ENST00000509197 559 ntBASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 MIR3940-201ENST00000579148 102 ntBASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 AC010601.2-201ENST00000623060 774 ntBASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 NME1-209ENST00000511355 1645 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC88AQ3V6T2 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 ACTG1P23-201ENST00000437653 1074 ntBASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 AL390726.3-201ENST00000567428 635 ntTSL 5 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 AC127002.1-201ENST00000619123 455 ntBASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
CCDC88AQ3V6T2 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 STK25-235ENST00000543554 2556 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 BCKDHA-202ENST00000457836 1745 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 TPM3P7-201ENST00000338274 732 ntBASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 TRBV20OR9-2-201ENST00000379435 416 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 MACROD2-204ENST00000407045 727 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 RN7SL789P-201ENST00000478944 293 ntBASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 THEG-204ENST00000530711 1162 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 AC091691.1-201ENST00000583587 1018 ntBASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 AL109954.3-201ENST00000615088 558 ntBASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC88AQ3V6T2 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms