Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC004918.3-201ENST00000602609 925 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 AL157392.4-201ENST00000609756 345 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 AC113385.2-201ENST00000614465 762 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 FAM69A-204ENST00000615519 865 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 HPD-204ENST00000543163 1709 ntTSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 ENO3-201ENST00000323997 1521 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL9A1P20849 ADPRH-205ENST00000478927 1501 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 AC090505.1-201ENST00000430515 1834 ntBASIC14.2□□□□□ -0.14
COL9A1P20849 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
COL9A1P20849 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL9A1P20849 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 AP001267.2-201ENST00000532619 2086 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 SNORA40.4-201ENST00000390971 128 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC14.19□□□□□ -0.14
COL9A1P20849 FAM25E-201ENST00000411791 322 ntTSL 3 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC14.19□□□□□ -0.14
COL9A1P20849 ZNF877P-201ENST00000437614 612 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC14.19□□□□□ -0.14
COL9A1P20849 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC14.19□□□□□ -0.14
COL9A1P20849 AP000959.1-201ENST00000441759 977 ntTSL 3 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC109454.2-201ENST00000503470 520 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC093835.1-201ENST00000508072 568 ntTSL 4 BASIC14.19□□□□□ -0.14
COL9A1P20849 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 AP001981.1-201ENST00000531132 738 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC023051.2-201ENST00000541141 460 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC018754.1-201ENST00000607486 925 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 MIR4726-201ENST00000615971 58 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 AC022919.1-201ENST00000624979 626 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.19□□□□□ -0.14
COL9A1P20849 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.19□□□□□ -0.14
COL9A1P20849 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL9A1P20849 NME1-209ENST00000511355 1645 ntTSL 5 BASIC14.19□□□□□ -0.14
COL9A1P20849 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 TBC1D27-202ENST00000424239 1573 ntBASIC14.18□□□□□ -0.14
COL9A1P20849 LINC00877-207ENST00000488545 1561 ntTSL 3 BASIC14.18□□□□□ -0.14
COL9A1P20849 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 USP39-220ENST00000613444 2161 ntTSL 2 BASIC14.18□□□□□ -0.14
COL9A1P20849 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
COL9A1P20849 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 SRSF10-205ENST00000374452 1194 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL9A1P20849 RLN2-201ENST00000381627 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms