Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 NAA40-205ENST00000539656 577 ntTSL 4 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC107464.3-201ENST00000609172 737 ntBASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 IGHG3-202ENST00000641136 2751 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 ABCD1P2-201ENST00000429313 1601 ntBASIC15.54■□□□□ 0.08
COL4A3BPQ9Y5P4 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AC073869.1-201ENST00000415574 2762 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 SNORA50C-201ENST00000408535 133 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 RN7SKP109-201ENST00000410592 316 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AL354861.1-201ENST00000445213 355 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 RN7SL8P-201ENST00000461771 266 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AC104784.1-201ENST00000473096 294 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 RNA5SP417-201ENST00000516459 108 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 TMCO5B-205ENST00000530020 894 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AP000911.2-201ENST00000534330 502 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AP000322.3-201ENST00000608665 388 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 RN7SL736P-201ENST00000613111 269 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 MIR7845-201ENST00000618396 99 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 SNORA50.1-201ENST00000628590 135 ntBASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 CLPB-209ENST00000538039 3078 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 LMX1B-202ENST00000373474 5797 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 EML1-203ENST00000334192 4064 ntTSL 5 BASIC15.53■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms