Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC020658.7-201ENST00000624274 2442 ntBASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ATG9B-203ENST00000469530 3489 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 FKBP4P6-201ENST00000457486 1332 ntBASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ZNF407-201ENST00000299687 7948 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 RN7SKP175-201ENST00000408472 289 ntBASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 HSPB1P2-201ENST00000448722 546 ntBASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 FGFR3P1-201ENST00000449999 601 ntBASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 SERPINA13P-202ENST00000478994 924 ntBASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 DYSF-203ENST00000409366 6606 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 DYSF-205ENST00000409651 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 VWA8-201ENST00000281496 3475 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
PDLIM3Q53GG5 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 ADARB1-214ENST00000629643 4583 ntTSL 5 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 ATP2C1-201ENST00000328560 3484 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 MARK2P9-201ENST00000430958 1727 ntBASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
PDLIM3Q53GG5 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms