RNA–Protein interactions for RNA: ENST00000157600.7

LMCD1-201, Transcript of LIM and cysteine rich domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LMCD1, Length 8,405 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMCD1-201ENST00000157600 DCAF8L2P0C7V8 631 aa20.95■□□□□ 0.94
LMCD1-201ENST00000157600 NISCHQ9Y2I1 1504 aa20.9■□□□□ 0.94
LMCD1-201ENST00000157600 PELP1Q8IZL8 1130 aaKnown RBP20.11■□□□□ 0.81
LMCD1-201ENST00000157600 SUPT5HO00267 1087 aaKnown RBP20.06■□□□□ 0.8
LMCD1-201ENST00000157600 APLP2Q06481 763 aa19.64■□□□□ 0.73
LMCD1-201ENST00000157600 SHROOM4Q9ULL8 1493 aa19.62■□□□□ 0.73
LMCD1-201ENST00000157600 FAM9AQ8IZU1 332 aaPredicted RBP19.55■□□□□ 0.72
LMCD1-201ENST00000157600 ZEB1P37275 1124 aaPredicted RBP19.32■□□□□ 0.68
LMCD1-201ENST00000157600 CCER1Q8TC90 406 aaPredicted RBP19.15■□□□□ 0.66
LMCD1-201ENST00000157600 CENPBP07199 599 aaPredicted RBP19.14■□□□□ 0.66
LMCD1-201ENST00000157600 EHMT2Q96KQ7 1210 aa18.99■□□□□ 0.63
LMCD1-201ENST00000157600 MYT1Q01538 1121 aa18.97■□□□□ 0.63
LMCD1-201ENST00000157600 PCGF6Q9BYE7 350 aa18.92■□□□□ 0.62
LMCD1-201ENST00000157600 TRIM41Q8WV44 630 aa18.89■□□□□ 0.61
LMCD1-201ENST00000157600 ERICH6Q7L0X2 663 aa18.84■□□□□ 0.61
LMCD1-201ENST00000157600 NEFLP07196 543 aa18.7■□□□□ 0.58
LMCD1-201ENST00000157600 UBTFP17480 764 aaKnown RBP18.63■□□□□ 0.57
LMCD1-201ENST00000157600 TTBK1Q5TCY1 1321 aaPredicted RBP18.49■□□□□ 0.55
LMCD1-201ENST00000157600 TRIM26Q12899 539 aaPredicted RBP18.46■□□□□ 0.55
LMCD1-201ENST00000157600 ATP1B4Q9UN42 357 aaPredicted RBP18.44■□□□□ 0.54
LMCD1-201ENST00000157600 RANGAP1P46060 587 aaPredicted RBP18.34■□□□□ 0.53
LMCD1-201ENST00000157600 YTHDC1Q96MU7 727 aaKnown RBP18.21■□□□□ 0.51
LMCD1-201ENST00000157600 DAXXQ9UER7 740 aaPredicted RBP18.19■□□□□ 0.5
LMCD1-201ENST00000157600 HRCP23327 699 aa18.13■□□□□ 0.49
LMCD1-201ENST00000157600 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
LMCD1-201ENST00000157600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.87■□□□□ 0.45
LMCD1-201ENST00000157600 HNRNPUL2Q1KMD3 747 aaKnown RBP17.87■□□□□ 0.45
LMCD1-201ENST00000157600 MYT1LQ9UL68 1186 aa17.81■□□□□ 0.44
LMCD1-201ENST00000157600 CCDC180Q9P1Z9 1646 aa17.78■□□□□ 0.44
LMCD1-201ENST00000157600 ITGAEP38570 1179 aa17.77■□□□□ 0.43
LMCD1-201ENST00000157600 PPARGC1BQ86YN6 1023 aaKnown RBP17.76■□□□□ 0.43
LMCD1-201ENST00000157600 RTL5Q5HYW3 569 aaPredicted RBP17.75■□□□□ 0.43
LMCD1-201ENST00000157600 DIEXFQ68CQ4 756 aaKnown RBP17.74■□□□□ 0.43
LMCD1-201ENST00000157600 ZNF316A6NFI3 1004 aaPredicted RBP17.71■□□□□ 0.43
LMCD1-201ENST00000157600 POLR3GLQ9BT43 218 aa17.69■□□□□ 0.42
LMCD1-201ENST00000157600 LOC105371045A0A1W2PR82 267 aa17.66■□□□□ 0.42
LMCD1-201ENST00000157600 CLSPNQ9HAW4 1339 aa17.6■□□□□ 0.41
LMCD1-201ENST00000157600 FAM50AQ14320 339 aaKnown RBP17.54■□□□□ 0.4
LMCD1-201ENST00000157600 ANP32CO43423 234 aa17.53■□□□□ 0.4
LMCD1-201ENST00000157600 ABCC9O60706 1549 aa17.49■□□□□ 0.39
LMCD1-201ENST00000157600 SLC4A1APQ9BWU0 796 aaKnown RBP17.47■□□□□ 0.39
LMCD1-201ENST00000157600 TRIM52Q96A61 297 aa17.44■□□□□ 0.38
LMCD1-201ENST00000157600 ZBTB47Q9UFB7 747 aaPredicted RBP17.44■□□□□ 0.38
LMCD1-201ENST00000157600 CDK11AQ9UQ88 783 aaPredicted RBP17.43■□□□□ 0.38
LMCD1-201ENST00000157600 DCAF1Q9Y4B6 1507 aa17.36■□□□□ 0.37
LMCD1-201ENST00000157600 NEFMP07197 916 aa17.34■□□□□ 0.37
LMCD1-201ENST00000157600 ZCCHC6Q5VYS8 1495 aaKnown RBP17.34■□□□□ 0.37
LMCD1-201ENST00000157600 SCRIBQ14160 1630 aa17.3■□□□□ 0.36
LMCD1-201ENST00000157600 NEUROD1Q13562 356 aa17.28■□□□□ 0.36
LMCD1-201ENST00000157600 ACIN1Q9UKV3 1341 aaKnown RBP17.25■□□□□ 0.35
LMCD1-201ENST00000157600 CNGB1Q14028 1251 aaPredicted RBP17.23■□□□□ 0.35
LMCD1-201ENST00000157600 CSRNP3Q8WYN3 585 aa17.23■□□□□ 0.35
LMCD1-201ENST00000157600 ANP32AP39687 249 aaKnown RBP17.22■□□□□ 0.35
LMCD1-201ENST00000157600 CANXP27824 592 aaKnown RBP17.21■□□□□ 0.35
LMCD1-201ENST00000157600 GTF3C3Q9Y5Q9 886 aa17.2■□□□□ 0.34
LMCD1-201ENST00000157600 PABPN1Q86U42 306 aaKnown RBP eCLIP17.16■□□□□ 0.34
LMCD1-201ENST00000157600 TONSLQ96HA7 1378 aa17.12■□□□□ 0.33
LMCD1-201ENST00000157600 ZNF326Q5BKZ1 582 aaKnown RBP17.12■□□□□ 0.33
LMCD1-201ENST00000157600 RB1CC1Q8TDY2 1594 aa17.1■□□□□ 0.33
LMCD1-201ENST00000157600 ANP32BQ92688 251 aaKnown RBP17.08■□□□□ 0.33
LMCD1-201ENST00000157600 EEA1Q15075 1411 aa17.07■□□□□ 0.32
LMCD1-201ENST00000157600 UPF2Q9HAU5 1272 aaKnown RBP17.06■□□□□ 0.32
LMCD1-201ENST00000157600 FBLN2P98095 1184 aa17.01■□□□□ 0.31
LMCD1-201ENST00000157600 NACADO15069 1562 aa16.99■□□□□ 0.31
LMCD1-201ENST00000157600 BCANQ96GW7 911 aa16.96■□□□□ 0.31
LMCD1-201ENST00000157600 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.94■□□□□ 0.3
LMCD1-201ENST00000157600 ESF1Q9H501 851 aaKnown RBP16.91■□□□□ 0.3
LMCD1-201ENST00000157600 HSP90AA1P07900 732 aaKnown RBP16.9■□□□□ 0.3
LMCD1-201ENST00000157600 RSF1Q96T23 1441 aaPredicted RBP16.87■□□□□ 0.29
LMCD1-201ENST00000157600 SLC24A1O60721 1099 aa16.85■□□□□ 0.29
LMCD1-201ENST00000157600 GOLGA3Q08378 1498 aa16.84■□□□□ 0.29
LMCD1-201ENST00000157600 GLIPR1L2Q4G1C9 344 aa16.84■□□□□ 0.29
LMCD1-201ENST00000157600 ZNF777Q9ULD5 760 aaPredicted RBP16.83■□□□□ 0.29
LMCD1-201ENST00000157600 CLIP1P30622 1438 aa16.83■□□□□ 0.28
LMCD1-201ENST00000157600 EIF5BO60841 1220 aaKnown RBP16.82■□□□□ 0.28
LMCD1-201ENST00000157600 MTUS2Q5JR59 1369 aa16.82■□□□□ 0.28
LMCD1-201ENST00000157600 HNRNPUQ00839 825 aaKnown RBP eCLIP16.8■□□□□ 0.28
LMCD1-201ENST00000157600 P3H3Q8IVL6 736 aa16.8■□□□□ 0.28
LMCD1-201ENST00000157600 NPM1P06748 294 aaKnown RBP eCLIP16.79■□□□□ 0.28
LMCD1-201ENST00000157600 TMC1Q8TDI8 760 aa16.79■□□□□ 0.28
LMCD1-201ENST00000157600 ANP32EQ9BTT0 268 aa16.76■□□□□ 0.27
LMCD1-201ENST00000157600 TSPY4P0CV99 314 aa16.76■□□□□ 0.27
LMCD1-201ENST00000157600 TSPY10P0CW01 314 aa16.76■□□□□ 0.27
LMCD1-201ENST00000157600 STAG3Q9UJ98 1225 aa16.75■□□□□ 0.27
LMCD1-201ENST00000157600 FKBP8Q14318 412 aa16.75■□□□□ 0.27
LMCD1-201ENST00000157600 WDR43Q15061 677 aaKnown RBP eCLIP16.74■□□□□ 0.27
LMCD1-201ENST00000157600 CCDC136Q96JN2 1154 aa16.73■□□□□ 0.27
LMCD1-201ENST00000157600 CEP164Q9UPV0 1460 aa16.71■□□□□ 0.27
LMCD1-201ENST00000157600 BAZ1AQ9NRL2 1556 aaPredicted RBP16.71■□□□□ 0.27
LMCD1-201ENST00000157600 MYH16Q9H6N6 1097 aa16.7■□□□□ 0.26
LMCD1-201ENST00000157600 NPM2Q86SE8 214 aaKnown RBP16.67■□□□□ 0.26
LMCD1-201ENST00000157600 CDCA8Q53HL2 280 aa16.67■□□□□ 0.26
LMCD1-201ENST00000157600 BAZ1BQ9UIG0 1483 aaKnown RBP16.66■□□□□ 0.26
LMCD1-201ENST00000157600 EIF4G2P78344 907 aaKnown RBP eCLIP16.66■□□□□ 0.26
LMCD1-201ENST00000157600 DDRGK1Q96HY6 314 aa16.65■□□□□ 0.26
LMCD1-201ENST00000157600 KIF27Q86VH2 1401 aa16.65■□□□□ 0.26
LMCD1-201ENST00000157600 DDX10Q13206 875 aaKnown RBP16.65■□□□□ 0.26
LMCD1-201ENST00000157600 BECN1Q14457 450 aa16.64■□□□□ 0.25
LMCD1-201ENST00000157600 CEP162Q5TB80 1403 aa16.64■□□□□ 0.25
LMCD1-201ENST00000157600 FAM9BQ8IZU0 186 aa16.63■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms