Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
MRE11P49959 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC16.33■□□□□ 0.2
MRE11P49959 PRSS30P-206ENST00000641773 873 ntBASIC16.33■□□□□ 0.2
MRE11P49959 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 STRCP1-201ENST00000509801 5328 ntBASIC16.33■□□□□ 0.2
MRE11P49959 PES1-205ENST00000405677 2708 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 CLIC4-201ENST00000374379 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 NOP2-212ENST00000541778 3038 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 PSME3-217ENST00000622892 3183 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 SALL4P6-201ENST00000429385 1691 ntBASIC16.33■□□□□ 0.2
MRE11P49959 USP2-AS1-202ENST00000500970 1784 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 CES1-201ENST00000360526 2006 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 GUCY1B3-202ENST00000502959 2255 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 ALDH9A1-201ENST00000354775 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 SLC39A11-201ENST00000255559 2737 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 RSPO2-201ENST00000276659 3111 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 ITFG2-201ENST00000228799 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 FTLP1-201ENST00000449155 526 ntBASIC16.32■□□□□ 0.2
MRE11P49959 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC16.32■□□□□ 0.2
MRE11P49959 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.32■□□□□ 0.2
MRE11P49959 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.32■□□□□ 0.2
MRE11P49959 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC16.32■□□□□ 0.2
MRE11P49959 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
MRE11P49959 ZNF71-201ENST00000328070 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
MRE11P49959 GALNT15-203ENST00000437509 2416 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
MRE11P49959 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
MRE11P49959 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 AC025183.3-201ENST00000623526 1482 ntBASIC16.31■□□□□ 0.2
MRE11P49959 ZNF564-201ENST00000339282 2935 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 KIF9-208ENST00000452770 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 AL138725.1-201ENST00000407347 1314 ntBASIC16.31■□□□□ 0.2
MRE11P49959 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
MRE11P49959 AC011700.1-201ENST00000610409 2627 ntBASIC16.31■□□□□ 0.2
MRE11P49959 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.31■□□□□ 0.2
MRE11P49959 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.31■□□□□ 0.2
MRE11P49959 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
MRE11P49959 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC16.31■□□□□ 0.2
MRE11P49959 TDH-203ENST00000531764 1110 ntBASIC16.31■□□□□ 0.2
MRE11P49959 AC079316.1-201ENST00000548397 411 ntBASIC16.31■□□□□ 0.2
MRE11P49959 CHMP4BP1-201ENST00000556017 588 ntBASIC16.31■□□□□ 0.2
MRE11P49959 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.31■□□□□ 0.2
MRE11P49959 BNIP3L-201ENST00000380629 3610 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms