Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 AC007881.3-201ENST00000608897 607 ntBASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 AC103691.2-201ENST00000618824 433 ntBASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 MIR497HG-202ENST00000572453 3838 ntBASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 MSANTD2P1-201ENST00000445341 1368 ntBASIC14.12□□□□□ -0.15
SHROOM3Q8TF72 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 MIR4326-201ENST00000582203 59 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AL132780.4-201ENST00000624870 1135 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AC012531.1-201ENST00000562848 2680 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 SMARCA2-254ENST00000636903 2471 ntTSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AC114271.1-201ENST00000612689 2813 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 PTENP1-202ENST00000532280 3996 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AC106827.1-201ENST00000366454 431 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 RN7SKP109-201ENST00000410592 316 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 RN7SL564P-201ENST00000496309 250 ntBASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SHROOM3Q8TF72 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 GPR88-201ENST00000315033 3491 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 AL137784.3-201ENST00000623858 2288 ntBASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 C20orf141-201ENST00000380589 730 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 RPL7P35-201ENST00000446943 740 ntBASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 IGHV1-12-201ENST00000518307 205 ntBASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 HERC2P11-201ENST00000562845 725 ntBASIC14.1□□□□□ -0.15
SHROOM3Q8TF72 AC100756.2-201ENST00000569537 736 ntBASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms