Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AC069421.1-201ENST00000447462 323 ntBASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AC008021.1-201ENST00000474180 414 ntBASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AP001102.1-201ENST00000528959 409 ntBASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AC111170.3-201ENST00000624282 2464 ntBASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CCDC88AQ3V6T2 AC020763.3-201ENST00000625095 2904 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 USP44-202ENST00000393091 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 SOD1-202ENST00000389995 865 ntTSL 3 BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 Z84721.1-201ENST00000438841 372 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 PRDX3P2-201ENST00000447051 611 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 AC009517.1-201ENST00000454750 570 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 RN7SL363P-201ENST00000482412 273 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 CXXC1P1-202ENST00000489409 1212 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 RN7SL638P-201ENST00000494527 290 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 AC139493.2-202ENST00000510155 544 ntTSL 3 BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 SNORA50D-202ENST00000627561 132 ntBASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC16.52■□□□□ 0.23
CCDC88AQ3V6T2 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AL513497.1-201ENST00000624273 2083 ntBASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 PMF1-201ENST00000368273 884 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 RNA5SP407-201ENST00000410275 110 ntBASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 RAB6B-205ENST00000486858 880 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 TATDN3-208ENST00000526997 794 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 TATDN3-213ENST00000531963 1291 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AC006504.5-210ENST00000585827 539 ntTSL 4 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CCDC88AQ3V6T2 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 HNRNPA1P3-201ENST00000440968 551 ntBASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 SOX2-OT-203ENST00000466034 926 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 FTH1-205ENST00000529631 507 ntTSL 4 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 INCA1-202ENST00000574617 1260 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 MIR6165-201ENST00000614803 84 ntBASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 CA6-205ENST00000480186 1493 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 FAM157C-201ENST00000563357 1806 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 273.5 ms