Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MRE11P49959 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
MRE11P49959 EGFLAM-204ENST00000397202 2398 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
MRE11P49959 C9orf47-203ENST00000375851 4837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
MRE11P49959 AC138028.6-201ENST00000616106 1482 ntBASIC16.35■□□□□ 0.21
MRE11P49959 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
MRE11P49959 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 USP39-207ENST00000450066 2086 ntTSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 ZNF302-203ENST00000457781 2600 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 AL138799.1-201ENST00000448213 1675 ntBASIC16.34■□□□□ 0.21
MRE11P49959 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 EDARADD-202ENST00000359362 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.34■□□□□ 0.21
MRE11P49959 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.34■□□□□ 0.21
MRE11P49959 BCRP2-202ENST00000447763 634 ntBASIC16.34■□□□□ 0.21
MRE11P49959 AL589987.1-201ENST00000453380 819 ntBASIC16.34■□□□□ 0.21
MRE11P49959 SERBP1P3-201ENST00000459980 809 ntBASIC16.34■□□□□ 0.21
MRE11P49959 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC16.34■□□□□ 0.21
MRE11P49959 BCRP6-201ENST00000510112 632 ntBASIC16.34■□□□□ 0.21
MRE11P49959 BCRP7-201ENST00000511549 544 ntBASIC16.34■□□□□ 0.21
MRE11P49959 AC104596.2-201ENST00000512793 793 ntBASIC16.34■□□□□ 0.21
MRE11P49959 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.34■□□□□ 0.21
MRE11P49959 RRP7BP-205ENST00000566851 833 ntBASIC16.34■□□□□ 0.21
MRE11P49959 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.34■□□□□ 0.21
MRE11P49959 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.34■□□□□ 0.21
MRE11P49959 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
MRE11P49959 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.34■□□□□ 0.21
MRE11P49959 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 TUBB4AP1-201ENST00000450755 1325 ntBASIC16.34■□□□□ 0.21
MRE11P49959 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 AGAP12P-202ENST00000603888 2141 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
MRE11P49959 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 ELOVL6-201ENST00000302274 3090 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
MRE11P49959 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 KNDC1-202ENST00000368571 3925 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 AL590440.2-201ENST00000641973 1595 ntBASIC16.34■□□□□ 0.21
MRE11P49959 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
MRE11P49959 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC16.33■□□□□ 0.21
MRE11P49959 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.33■□□□□ 0.21
MRE11P49959 BCL2L2-201ENST00000250405 3605 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MRE11P49959 PDZRN3-205ENST00000466780 2737 ntTSL 2 BASIC16.33■□□□□ 0.21
MRE11P49959 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MRE11P49959 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MRE11P49959 SNED1-205ENST00000405547 7986 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
MRE11P49959 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
MRE11P49959 ILF3-201ENST00000250241 3035 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
MRE11P49959 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 ZWILCH-203ENST00000535141 2206 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 SYTL4-201ENST00000263033 2335 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 MIR326-201ENST00000362220 95 ntBASIC16.33■□□□□ 0.2
MRE11P49959 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
MRE11P49959 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 FNTAP2-201ENST00000430308 634 ntBASIC16.33■□□□□ 0.2
MRE11P49959 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.33■□□□□ 0.2
MRE11P49959 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
MRE11P49959 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 AP000812.2-201ENST00000538934 718 ntBASIC16.33■□□□□ 0.2
MRE11P49959 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC16.33■□□□□ 0.2
MRE11P49959 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.33■□□□□ 0.2
MRE11P49959 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC16.33■□□□□ 0.2
MRE11P49959 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 57.4 ms