Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 ALDOA-204ENST00000412304 1603 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB1P09429 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HMGB1P09429 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB1P09429 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC16.4■□□□□ 0.22
HMGB1P09429 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
HMGB1P09429 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
HMGB1P09429 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
HMGB1P09429 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.4■□□□□ 0.22
HMGB1P09429 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.4■□□□□ 0.22
HMGB1P09429 FTH1P22-201ENST00000456305 520 ntBASIC16.4■□□□□ 0.22
HMGB1P09429 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC16.4■□□□□ 0.22
HMGB1P09429 NUP210P1-202ENST00000504322 710 ntBASIC16.4■□□□□ 0.22
HMGB1P09429 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.4■□□□□ 0.22
HMGB1P09429 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC16.4■□□□□ 0.22
HMGB1P09429 MIR3677-201ENST00000578964 60 ntBASIC16.4■□□□□ 0.22
HMGB1P09429 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 GOLGA8UP-201ENST00000527159 1755 ntBASIC16.4■□□□□ 0.22
HMGB1P09429 AC008040.5-201ENST00000599781 1781 ntBASIC16.4■□□□□ 0.22
HMGB1P09429 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 AC004241.5-201ENST00000623870 2448 ntBASIC16.4■□□□□ 0.22
HMGB1P09429 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
HMGB1P09429 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HMGB1P09429 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HMGB1P09429 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
HMGB1P09429 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC16.39■□□□□ 0.22
HMGB1P09429 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC16.39■□□□□ 0.22
HMGB1P09429 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
HMGB1P09429 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB1P09429 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 TNS2-219ENST00000552570 4714 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB1P09429 OR2K2-202ENST00000374428 1038 ntBASIC16.39■□□□□ 0.21
HMGB1P09429 AL627231.1-201ENST00000394467 1125 ntBASIC16.39■□□□□ 0.21
HMGB1P09429 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB1P09429 EEF1DP2-201ENST00000433698 843 ntBASIC16.39■□□□□ 0.21
HMGB1P09429 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB1P09429 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC16.39■□□□□ 0.21
HMGB1P09429 AC068152.1-205ENST00000575173 1081 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.39■□□□□ 0.21
HMGB1P09429 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 MIR9-3HG-201ENST00000536780 4778 ntTSL 3 BASIC16.39■□□□□ 0.21
HMGB1P09429 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 AC024075.2-201ENST00000598112 1473 ntBASIC16.39■□□□□ 0.21
HMGB1P09429 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB1P09429 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC16.39■□□□□ 0.21
HMGB1P09429 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC16.39■□□□□ 0.21
HMGB1P09429 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HMGB1P09429 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC16.38■□□□□ 0.21
HMGB1P09429 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 MIR497HG-202ENST00000572453 3838 ntBASIC16.38■□□□□ 0.21
HMGB1P09429 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 RAB11FIP1-201ENST00000287263 6253 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HMGB1P09429 TBC1D3J-201ENST00000620719 1426 ntBASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 218.9 ms