Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FURIN-201ENST00000268171 4244 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 SYNCRIP-201ENST00000355238 6449 ntAPPRIS ALT1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 ARHGAP20-201ENST00000260283 6189 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 SPRTN-202ENST00000295050 3468 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 CCDC112-201ENST00000379611 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 AL162615.1-201ENST00000429893 1653 ntBASIC10.81□□□□□ -0.68
CXCL1P09341 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 MROH7-204ENST00000409996 2977 ntTSL 5 BASIC10.81□□□□□ -0.68
CXCL1P09341 TCF3-202ENST00000344749 4289 ntTSL 5 BASIC10.81□□□□□ -0.68
CXCL1P09341 AC100757.3-201ENST00000622361 1406 ntBASIC10.81□□□□□ -0.68
CXCL1P09341 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 LINC00664-203ENST00000599078 3760 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 BBOF1-201ENST00000394009 3106 ntAPPRIS P2 TSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 RBM15-201ENST00000369784 4244 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 PHC2-203ENST00000373422 2799 ntTSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 CNKSR2-207ENST00000543067 4355 ntTSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 FOXO4-202ENST00000374259 3301 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 KLHL30-201ENST00000409223 3726 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
CXCL1P09341 TXNRD1-202ENST00000388854 4277 ntTSL 5 BASIC10.81□□□□□ -0.68
CXCL1P09341 MAGEA11-202ENST00000355220 1864 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
CXCL1P09341 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
CXCL1P09341 POFUT2-213ENST00000612472 2959 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 CBR4-202ENST00000504480 1602 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 AC008158.1-201ENST00000578759 3668 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 NBR1-202ENST00000542611 2703 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 FCRLA-206ENST00000367949 1792 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 PPP4R3B-206ENST00000616407 4385 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 AP1M1-203ENST00000444449 2311 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 TRERF1-202ENST00000354325 4138 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 CARF-213ENST00000438828 3574 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 GOLGA1-202ENST00000373555 4811 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 DQX1-201ENST00000393951 2540 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 AC012485.1-201ENST00000456601 2509 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 EXOC7-216ENST00000589210 4751 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 ALDH18A1-202ENST00000371224 3359 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
CXCL1P09341 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 AL022342.1-201ENST00000400363 863 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 RPSAP43-201ENST00000402237 625 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 ACTBP8-201ENST00000403258 1108 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 KLF2P2-201ENST00000416807 1039 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 UPF3AP3-201ENST00000420996 769 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 AC092580.3-201ENST00000430932 139 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC10.8□□□□□ -0.68
CXCL1P09341 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC10.8□□□□□ -0.68
CXCL1P09341 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
CXCL1P09341 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 ZNF221-205ENST00000622072 2102 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 Z92544.3-201ENST00000624747 417 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 PPP1R26P2-201ENST00000611403 3595 ntBASIC10.8□□□□□ -0.68
CXCL1P09341 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 GLT8D2-201ENST00000360814 1880 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 ATG7-213ENST00000446450 2042 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 MTERF2-207ENST00000552029 3235 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 RBFOX1-208ENST00000547372 3524 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 AGER-206ENST00000375070 1463 ntTSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC10.8□□□□□ -0.68
CXCL1P09341 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC10.8□□□□□ -0.68
CXCL1P09341 PRAME-203ENST00000402697 2057 ntAPPRIS P2 TSL 5 BASIC10.8□□□□□ -0.68
CXCL1P09341 DIDO1-205ENST00000370371 2833 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 PAFAH1B2-204ENST00000527958 4198 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 CNP-202ENST00000393892 5217 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 ADGRG6-204ENST00000367609 6887 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
CXCL1P09341 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CXCL1P09341 NEDD4L-208ENST00000456173 4978 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
CXCL1P09341 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
CXCL1P09341 CHAT-202ENST00000339797 2124 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
CXCL1P09341 CHAT-204ENST00000395559 2114 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
CXCL1P09341 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms