Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AL357563.1-201ENST00000404728 395 ntBASIC12.81□□□□□ -0.36
LRFN1Q9P244 RPL3P2-204ENST00000413027 1203 ntBASIC12.81□□□□□ -0.36
LRFN1Q9P244 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AL009176.1-201ENST00000607876 650 ntBASIC12.81□□□□□ -0.36
LRFN1Q9P244 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 GOLGA8UP-201ENST00000527159 1755 ntBASIC12.81□□□□□ -0.36
LRFN1Q9P244 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC12.81□□□□□ -0.36
LRFN1Q9P244 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
LRFN1Q9P244 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 MIR1307-201ENST00000408840 149 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 LINC01868-201ENST00000414965 562 ntTSL 4 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 GNG10P1-201ENST00000452289 199 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 FAHD2CP-203ENST00000467292 965 ntTSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 LINC00634-202ENST00000505157 222 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 NUDCD2-202ENST00000517501 448 ntTSL 5 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 IGHV1-12-201ENST00000518307 205 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 AL031673.1-201ENST00000611460 466 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 BAP1-211ENST00000615113 489 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 CTBP2P8-201ENST00000422584 1330 ntBASIC12.8□□□□□ -0.36
LRFN1Q9P244 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
LRFN1Q9P244 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.8□□□□□ -0.36
LRFN1Q9P244 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 552.8 ms