Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 ALPL-206ENST00000539907 2241 ntTSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC12.5□□□□□ -0.41
CLRN1P58418 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CLRN1P58418 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CLRN1P58418 RERE-201ENST00000337907 8026 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 SLC46A1-207ENST00000612814 6376 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 KCNS2-202ENST00000521839 4340 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CLRN1P58418 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CLRN1P58418 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC12.49□□□□□ -0.41
CLRN1P58418 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC12.49□□□□□ -0.41
CLRN1P58418 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 SCARNA20.5-201ENST00000516991 142 ntBASIC12.49□□□□□ -0.41
CLRN1P58418 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC12.49□□□□□ -0.41
CLRN1P58418 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
CLRN1P58418 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC12.49□□□□□ -0.41
CLRN1P58418 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 AL021707.6-201ENST00000609212 491 ntBASIC12.49□□□□□ -0.41
CLRN1P58418 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC12.49□□□□□ -0.41
CLRN1P58418 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 KIAA0513-201ENST00000258180 7404 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 CALML3-201ENST00000315238 2763 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CLRN1P58418 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 CACNA1F-202ENST00000376251 5813 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC12.49□□□□□ -0.41
CLRN1P58418 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 PPP4R3B-203ENST00000611717 5243 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC12.49□□□□□ -0.41
CLRN1P58418 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
CLRN1P58418 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
CLRN1P58418 AC006001.3-201ENST00000449307 7092 ntTSL 3 BASIC12.49□□□□□ -0.41
CLRN1P58418 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
CLRN1P58418 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.48□□□□□ -0.41
CLRN1P58418 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC12.48□□□□□ -0.41
CLRN1P58418 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC12.48□□□□□ -0.41
CLRN1P58418 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC12.48□□□□□ -0.41
CLRN1P58418 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
CLRN1P58418 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 AC025183.3-201ENST00000623526 1482 ntBASIC12.48□□□□□ -0.41
CLRN1P58418 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC12.48□□□□□ -0.41
CLRN1P58418 AGAP12P-201ENST00000585227 2359 ntBASIC12.48□□□□□ -0.41
CLRN1P58418 SNX33-201ENST00000308527 8008 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
CLRN1P58418 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.48□□□□□ -0.41
CLRN1P58418 SLC43A3-214ENST00000529554 2207 ntAPPRIS P3 TSL 2 BASIC12.48□□□□□ -0.41
CLRN1P58418 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
CLRN1P58418 TUBBP5-203ENST00000508529 1334 ntBASIC12.48□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms