Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 CYTH1-215ENST00000591455 3286 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
COL6A2P12110 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 AC009542.1-201ENST00000412549 1810 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 RPL31-207ENST00000409711 2328 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 PTPN5-203ENST00000396168 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 AC020763.3-201ENST00000625095 2904 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL6A2P12110 AC079776.1-201ENST00000401540 1152 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.8□□□□□ -0.2
COL6A2P12110 RN7SL530P-201ENST00000485097 298 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.8□□□□□ -0.2
COL6A2P12110 AC116345.2-201ENST00000512837 523 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 AC005740.1-201ENST00000515639 522 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC13.8□□□□□ -0.2
COL6A2P12110 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.8□□□□□ -0.2
COL6A2P12110 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 AL022334.2-201ENST00000610000 484 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 AC079336.7-201ENST00000623428 1078 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC13.8□□□□□ -0.2
COL6A2P12110 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 EWSAT1-201ENST00000415504 2214 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 AC104129.1-202ENST00000480694 4481 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 VENTXP1-201ENST00000569334 2716 ntBASIC13.8□□□□□ -0.2
COL6A2P12110 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 KIAA1614-201ENST00000367587 3309 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
COL6A2P12110 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 C2-209ENST00000452323 1999 ntTSL 2 BASIC13.8□□□□□ -0.2
COL6A2P12110 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
COL6A2P12110 C21orf62-AS1-201ENST00000382375 2453 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
COL6A2P12110 PI4KAP2-201ENST00000360806 2080 ntBASIC13.79□□□□□ -0.2
COL6A2P12110 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
COL6A2P12110 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 WBP2-203ENST00000433525 928 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 AC007279.1-201ENST00000448547 837 ntBASIC13.79□□□□□ -0.2
COL6A2P12110 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC13.79□□□□□ -0.2
COL6A2P12110 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 MIR6775-201ENST00000617557 69 ntBASIC13.79□□□□□ -0.2
COL6A2P12110 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 AC245140.2-201ENST00000624054 1939 ntBASIC13.79□□□□□ -0.2
COL6A2P12110 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms