Protein–RNA interactions for Protein: P10747

CD28, T-cell-specific surface glycoprotein CD28, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD28P10747 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 AP001267.2-201ENST00000532619 2086 ntBASIC10.94□□□□□ -0.66
CD28P10747 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC10.94□□□□□ -0.66
CD28P10747 HLCS-201ENST00000336648 6010 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC10.94□□□□□ -0.66
CD28P10747 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
CD28P10747 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 AC019109.1-201ENST00000401725 1874 ntBASIC10.93□□□□□ -0.66
CD28P10747 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 AMER2-201ENST00000357816 10055 ntTSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 PDXDC2P-206ENST00000534700 1315 ntBASIC10.93□□□□□ -0.66
CD28P10747 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 HSPA8P5-201ENST00000456928 2069 ntBASIC10.93□□□□□ -0.66
CD28P10747 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 MMP7-201ENST00000260227 1125 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 HMGA1P1-201ENST00000415560 1062 ntBASIC10.93□□□□□ -0.66
CD28P10747 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC10.93□□□□□ -0.66
CD28P10747 GNG10P1-201ENST00000452289 199 ntBASIC10.93□□□□□ -0.66
CD28P10747 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC10.93□□□□□ -0.66
CD28P10747 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 RN7SL396P-201ENST00000471086 295 ntBASIC10.93□□□□□ -0.66
CD28P10747 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 AC093909.3-201ENST00000504783 336 ntBASIC10.93□□□□□ -0.66
CD28P10747 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 AL118522.1-201ENST00000611368 560 ntBASIC10.93□□□□□ -0.66
CD28P10747 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 AC027559.1-203ENST00000635726 517 ntTSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 SPTBN2-209ENST00000533211 8128 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 AC012617.1-204ENST00000586340 2305 ntBASIC10.93□□□□□ -0.66
CD28P10747 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 TBC1D27-202ENST00000424239 1573 ntBASIC10.93□□□□□ -0.66
CD28P10747 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC10.93□□□□□ -0.66
CD28P10747 TMEM131L-202ENST00000409663 5017 ntAPPRIS P3 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 ADK-205ENST00000539909 1866 ntTSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 AJAP1-202ENST00000378191 11666 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC10.93□□□□□ -0.66
CD28P10747 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 DNM1-212ENST00000627543 4734 ntAPPRIS ALT1 TSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC10.93□□□□□ -0.66
CD28P10747 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 USP6NL-205ENST00000609104 11377 ntAPPRIS ALT2 TSL 1 (best) BASIC10.93□□□□□ -0.66
CD28P10747 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC10.92□□□□□ -0.66
CD28P10747 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC10.92□□□□□ -0.66
CD28P10747 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
CD28P10747 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC10.92□□□□□ -0.66
CD28P10747 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC10.92□□□□□ -0.66
CD28P10747 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 AC005840.4-201ENST00000541242 2494 ntBASIC10.92□□□□□ -0.66
CD28P10747 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
CD28P10747 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms