Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 KATNAL1-202ENST00000380617 1634 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 CD300LB-201ENST00000314401 993 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 SUSD3-201ENST00000375469 1114 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 MESTP4-201ENST00000412333 1204 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AP000343.1-201ENST00000440602 385 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 IGHD-202ENST00000613640 1155 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC138430.2-201ENST00000624068 504 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 CD74-201ENST00000009530 981 ntAPPRIS P2 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 TBC1D3P1-201ENST00000590047 1693 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC023824.1-201ENST00000562945 2975 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC092384.3-202ENST00000564646 2873 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 RIPPLY2-201ENST00000369687 521 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 APRT-202ENST00000426324 664 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 DHRS4L1-201ENST00000558293 855 ntTSL 5 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 SNAPC5-207ENST00000566658 574 ntAPPRIS ALT2 TSL 4 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 AC010531.7-201ENST00000602665 465 ntTSL 3 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 C17orf98-201ENST00000614158 632 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 MIR941-1-201ENST00000636396 72 ntBASIC13.26□□□□□ -0.29
VPS13AQ96RL7 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 ZNF684-203ENST00000372699 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
VPS13AQ96RL7 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 MEG3-214ENST00000519709 1726 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 IL1RN-205ENST00000409930 848 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 RPS23-205ENST00000510019 1019 ntTSL 4 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AC245884.8-201ENST00000599382 880 ntBASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AC009041.1-202ENST00000599946 987 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 TUBAP-201ENST00000425085 1352 ntBASIC13.25□□□□□ -0.29
VPS13AQ96RL7 MKRN7P-201ENST00000433469 1371 ntBASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AC140481.2-201ENST00000457169 695 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 RN7SL483P-201ENST00000478417 285 ntBASIC13.25□□□□□ -0.29
VPS13AQ96RL7 LDHAL6CP-201ENST00000502352 1142 ntBASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AC097658.2-201ENST00000512715 624 ntTSL 3 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SCOC-209ENST00000512749 841 ntAPPRIS ALT1 TSL 3 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 IDH3A-207ENST00000558554 1595 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AC004554.2-201ENST00000634846 1893 ntTSL 5 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 SPHK2-206ENST00000598088 2866 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 BX088651.4-202ENST00000428895 1479 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.25□□□□□ -0.29
VPS13AQ96RL7 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms