Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC10.84□□□□□ -0.67
CXCL1P09341 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC10.84□□□□□ -0.67
CXCL1P09341 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 LINC01561-201ENST00000369071 2176 ntBASIC10.84□□□□□ -0.67
CXCL1P09341 ZNF674-201ENST00000414387 2274 ntAPPRIS ALT2 TSL 3 BASIC10.84□□□□□ -0.67
CXCL1P09341 ACCS-201ENST00000263776 2362 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 CLEC4F-201ENST00000272367 2475 ntAPPRIS P3 TSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 TNIP1-201ENST00000315050 2785 ntAPPRIS P3 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 ZMIZ2-215ENST00000615423 2772 ntTSL 5 BASIC10.84□□□□□ -0.67
CXCL1P09341 PCDHGB8P-202ENST00000507007 2873 ntBASIC10.84□□□□□ -0.67
CXCL1P09341 TF-201ENST00000402696 2968 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 NBN-203ENST00000409330 4523 ntTSL 5 BASIC10.84□□□□□ -0.67
CXCL1P09341 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 CDKN2B-201ENST00000276925 3911 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 FGFR2-212ENST00000369060 3244 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 RBM39-203ENST00000361162 2831 ntAPPRIS ALT1 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 MCM3-202ENST00000419835 2523 ntTSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 RGS12-201ENST00000336727 4674 ntAPPRIS P4 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 PCSK2-202ENST00000377899 4674 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 KCTD21-AS1-207ENST00000600795 1549 ntBASIC10.84□□□□□ -0.67
CXCL1P09341 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
CXCL1P09341 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
CXCL1P09341 PRICKLE1-216ENST00000640132 4278 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 AL391294.1-201ENST00000641352 4068 ntBASIC10.84□□□□□ -0.67
CXCL1P09341 ITPRIP-203ENST00000358187 3981 ntAPPRIS P1 TSL 2 BASIC10.84□□□□□ -0.67
CXCL1P09341 NLRP7-202ENST00000340844 3250 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.67
CXCL1P09341 SQSTM1-201ENST00000360718 2253 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 C9orf3-201ENST00000277198 1966 ntTSL 2 BASIC10.83□□□□□ -0.68
CXCL1P09341 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC10.83□□□□□ -0.68
CXCL1P09341 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 CTCFL-217ENST00000608425 2915 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 SUGP2-203ENST00000452918 6176 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 LRFN3-204ENST00000588831 3689 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 DUOX2-201ENST00000389039 6533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 DSCR3-201ENST00000309117 3256 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC10.83□□□□□ -0.68
CXCL1P09341 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CXCL1P09341 WRB-204ENST00000398753 699 ntTSL 3 BASIC10.83□□□□□ -0.68
CXCL1P09341 HNRNPA3P1-201ENST00000401429 1139 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC10.83□□□□□ -0.68
CXCL1P09341 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 KLF2P3-201ENST00000451977 1087 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 HNRNPA3P5-201ENST00000455201 833 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC10.83□□□□□ -0.68
CXCL1P09341 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 AC067863.1-201ENST00000494933 530 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC10.83□□□□□ -0.68
CXCL1P09341 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC10.83□□□□□ -0.68
CXCL1P09341 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC10.83□□□□□ -0.68
CXCL1P09341 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CXCL1P09341 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 BRI3BPP1-201ENST00000594224 787 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 SRD5A3P1-201ENST00000603021 949 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC10.83□□□□□ -0.68
CXCL1P09341 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 STRADA-204ENST00000392950 2778 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 RBMY1E-203ENST00000382659 1921 ntAPPRIS P5 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 RBMY1D-202ENST00000382680 1921 ntAPPRIS P5 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 RBMY1A1-203ENST00000382707 1921 ntAPPRIS P5 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 RBMY1B-202ENST00000383020 1921 ntAPPRIS P5 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 MUC20-205ENST00000447234 2589 ntAPPRIS P2 TSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 ANKDD1A-201ENST00000319580 3110 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 EIF3C-209ENST00000566501 3128 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 KCNAB1-215ENST00000618897 4437 ntTSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 KRI1-201ENST00000312962 3023 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 CCDC92-208ENST00000545135 4883 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
CXCL1P09341 EIF3L-214ENST00000624234 2091 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 MB21D1-201ENST00000370315 3182 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC10.83□□□□□ -0.68
CXCL1P09341 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
CXCL1P09341 AC026797.1-201ENST00000624837 2869 ntBASIC10.83□□□□□ -0.68
CXCL1P09341 PLEKHG5-205ENST00000377740 3550 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
CXCL1P09341 DNAJC9-201ENST00000372950 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CXCL1P09341 ARHGAP30-201ENST00000368013 4394 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
CXCL1P09341 LIG1-201ENST00000263274 3384 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
CXCL1P09341 FAM131B-202ENST00000409346 4295 ntAPPRIS P3 TSL 5 BASIC10.82□□□□□ -0.68
CXCL1P09341 AC091948.1-201ENST00000501695 2033 ntTSL 2 BASIC10.82□□□□□ -0.68
CXCL1P09341 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC10.82□□□□□ -0.68
CXCL1P09341 AL590440.2-201ENST00000641973 1595 ntBASIC10.82□□□□□ -0.68
CXCL1P09341 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
CXCL1P09341 ATF4P4-201ENST00000393544 1930 ntBASIC10.82□□□□□ -0.68
CXCL1P09341 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC10.82□□□□□ -0.68
CXCL1P09341 REXO5-201ENST00000261377 2722 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
CXCL1P09341 LRTM2-208ENST00000543818 3986 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms