RNA–Protein interactions for RNA: ENST00000369071.4

LINC01561-201, Transcript of long intergenic non-protein coding RNA 1561, humanhuman

BASIC

Gene LINC01561, Length 2,176 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01561-201ENST00000369071 NISCHQ9Y2I1 1504 aa25.46■■□□□ 1.67
LINC01561-201ENST00000369071 SHROOM4Q9ULL8 1493 aa21.81■■□□□ 1.08
LINC01561-201ENST00000369071 ZCCHC6Q5VYS8 1495 aaKnown RBP21.6■■□□□ 1.05
LINC01561-201ENST00000369071 CCDC180Q9P1Z9 1646 aa21.53■■□□□ 1.04
LINC01561-201ENST00000369071 SUPT5HO00267 1087 aaKnown RBP21.51■■□□□ 1.03
LINC01561-201ENST00000369071 MYO15BQ96JP2 1530 aa21.13■□□□□ 0.97
LINC01561-201ENST00000369071 CHIC1Q5VXU3 224 aa21.12■□□□□ 0.97
LINC01561-201ENST00000369071 HRCP23327 699 aa20.94■□□□□ 0.94
LINC01561-201ENST00000369071 DCAF1Q9Y4B6 1507 aa20.92■□□□□ 0.94
LINC01561-201ENST00000369071 DCAF8L2P0C7V8 631 aa20.9■□□□□ 0.94
LINC01561-201ENST00000369071 PCGF6Q9BYE7 350 aa20.69■□□□□ 0.9
LINC01561-201ENST00000369071 LOC105371045A0A1W2PR82 267 aa20.48■□□□□ 0.87
LINC01561-201ENST00000369071 ABCC9O60706 1549 aa20.44■□□□□ 0.86
LINC01561-201ENST00000369071 PPARGC1BQ86YN6 1023 aaKnown RBP20.42■□□□□ 0.86
LINC01561-201ENST00000369071 TRIM26Q12899 539 aaPredicted RBP20.28■□□□□ 0.84
LINC01561-201ENST00000369071 RSF1Q96T23 1441 aaPredicted RBP20.25■□□□□ 0.83
LINC01561-201ENST00000369071 SCRIBQ14160 1630 aa20.18■□□□□ 0.82
LINC01561-201ENST00000369071 RB1CC1Q8TDY2 1594 aa20.08■□□□□ 0.8
LINC01561-201ENST00000369071 TRIM41Q8WV44 630 aa20.04■□□□□ 0.8
LINC01561-201ENST00000369071 ZEB1P37275 1124 aaPredicted RBP19.96■□□□□ 0.79
LINC01561-201ENST00000369071 FAM9AQ8IZU1 332 aaPredicted RBP19.85■□□□□ 0.77
LINC01561-201ENST00000369071 CECR2Q9BXF3 1484 aa19.83■□□□□ 0.76
LINC01561-201ENST00000369071 NACADO15069 1562 aa19.83■□□□□ 0.76
LINC01561-201ENST00000369071 MROH2BQ7Z745 1585 aa19.8■□□□□ 0.76
LINC01561-201ENST00000369071 WIZO95785 1651 aa19.71■□□□□ 0.74
LINC01561-201ENST00000369071 EHMT2Q96KQ7 1210 aa19.64■□□□□ 0.74
LINC01561-201ENST00000369071 BAZ1AQ9NRL2 1556 aaPredicted RBP19.63■□□□□ 0.73
LINC01561-201ENST00000369071 EIF4G1Q04637 1599 aaKnown RBP19.62■□□□□ 0.73
LINC01561-201ENST00000369071 SCAF1Q9H7N4 1312 aaKnown RBP19.46■□□□□ 0.71
LINC01561-201ENST00000369071 TOP2AP11388 1531 aaKnown RBP19.41■□□□□ 0.7
LINC01561-201ENST00000369071 DNAJC5BQ9UF47 199 aa19.41■□□□□ 0.7
LINC01561-201ENST00000369071 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.38■□□□□ 0.69
LINC01561-201ENST00000369071 PELP1Q8IZL8 1130 aaKnown RBP19.38■□□□□ 0.69
LINC01561-201ENST00000369071 WRNQ14191 1432 aaPredicted RBP eCLIP19.36■□□□□ 0.69
LINC01561-201ENST00000369071 ABCC8Q09428 1581 aa19.35■□□□□ 0.69
LINC01561-201ENST00000369071 CCDC88BA6NC98 1476 aa19.34■□□□□ 0.69
LINC01561-201ENST00000369071 CCER1Q8TC90 406 aaPredicted RBP19.33■□□□□ 0.69
LINC01561-201ENST00000369071 SMARCA4P51532 1647 aa19.33■□□□□ 0.69
LINC01561-201ENST00000369071 SMARCA2P51531 1590 aa19.32■□□□□ 0.68
LINC01561-201ENST00000369071 CEP162Q5TB80 1403 aa19.26■□□□□ 0.67
LINC01561-201ENST00000369071 TNIKQ9UKE5 1360 aa19.24■□□□□ 0.67
LINC01561-201ENST00000369071 SOGA1O94964 1423 aa19.23■□□□□ 0.67
LINC01561-201ENST00000369071 EEA1Q15075 1411 aa19.19■□□□□ 0.66
LINC01561-201ENST00000369071 ACIN1Q9UKV3 1341 aaKnown RBP19.18■□□□□ 0.66
LINC01561-201ENST00000369071 UNC13AQ9UPW8 1703 aa19.18■□□□□ 0.66
LINC01561-201ENST00000369071 DIEXFQ68CQ4 756 aaKnown RBP19.13■□□□□ 0.65
LINC01561-201ENST00000369071 CSRNP3Q8WYN3 585 aa19.13■□□□□ 0.65
LINC01561-201ENST00000369071 RUSC2Q8N2Y8 1516 aa19.12■□□□□ 0.65
LINC01561-201ENST00000369071 NEUROD1Q13562 356 aa19.12■□□□□ 0.65
LINC01561-201ENST00000369071 TTBK1Q5TCY1 1321 aaPredicted RBP19.09■□□□□ 0.65
LINC01561-201ENST00000369071 GOLGA3Q08378 1498 aa19.06■□□□□ 0.64
LINC01561-201ENST00000369071 UBTFP17480 764 aaKnown RBP19.03■□□□□ 0.64
LINC01561-201ENST00000369071 CENPBP07199 599 aaPredicted RBP18.99■□□□□ 0.63
LINC01561-201ENST00000369071 PEG3Q9GZU2 1588 aa18.98■□□□□ 0.63
LINC01561-201ENST00000369071 ZNF316A6NFI3 1004 aaPredicted RBP18.94■□□□□ 0.62
LINC01561-201ENST00000369071 GTF3C3Q9Y5Q9 886 aa18.94■□□□□ 0.62
LINC01561-201ENST00000369071 KIF21BO75037 1637 aa18.94■□□□□ 0.62
LINC01561-201ENST00000369071 BICRAQ9NZM4 1560 aa18.93■□□□□ 0.62
LINC01561-201ENST00000369071 CEP164Q9UPV0 1460 aa18.93■□□□□ 0.62
LINC01561-201ENST00000369071 SYNJ1O43426 1573 aa18.91■□□□□ 0.62
LINC01561-201ENST00000369071 CLIP1P30622 1438 aa18.85■□□□□ 0.61
LINC01561-201ENST00000369071 PABPN1Q86U42 306 aaKnown RBP eCLIP18.83■□□□□ 0.6
LINC01561-201ENST00000369071 VPS8Q8N3P4 1428 aa18.82■□□□□ 0.6
LINC01561-201ENST00000369071 BAZ1BQ9UIG0 1483 aaKnown RBP18.81■□□□□ 0.6
LINC01561-201ENST00000369071 HNRNPUL2Q1KMD3 747 aaKnown RBP18.78■□□□□ 0.6
LINC01561-201ENST00000369071 ATAD2BQ9ULI0 1458 aa18.76■□□□□ 0.59
LINC01561-201ENST00000369071 RAPGEF2Q9Y4G8 1499 aa18.75■□□□□ 0.59
LINC01561-201ENST00000369071 MIER1Q8N108 512 aa18.7■□□□□ 0.58
LINC01561-201ENST00000369071 TOP2BQ02880 1626 aa18.66■□□□□ 0.58
LINC01561-201ENST00000369071 APLP2Q06481 763 aa18.66■□□□□ 0.58
LINC01561-201ENST00000369071 YTHDC1Q96MU7 727 aaKnown RBP18.64■□□□□ 0.57
LINC01561-201ENST00000369071 BIVM-ERCC5R4GMW8 1640 aa18.6■□□□□ 0.57
LINC01561-201ENST00000369071 ERICH3Q5RHP9 1530 aa18.58■□□□□ 0.57
LINC01561-201ENST00000369071 PRXQ9BXM0 1461 aa18.56■□□□□ 0.56
LINC01561-201ENST00000369071 CLSPNQ9HAW4 1339 aa18.56■□□□□ 0.56
LINC01561-201ENST00000369071 ARAP1Q96P48 1450 aa18.54■□□□□ 0.56
LINC01561-201ENST00000369071 RANGAP1P46060 587 aaPredicted RBP18.54■□□□□ 0.56
LINC01561-201ENST00000369071 DHX57Q6P158 1386 aaKnown RBP18.53■□□□□ 0.56
LINC01561-201ENST00000369071 MYT1Q01538 1121 aa18.47■□□□□ 0.55
LINC01561-201ENST00000369071 KANK4Q5T7N3 995 aaPredicted RBP18.45■□□□□ 0.54
LINC01561-201ENST00000369071 DNAJC5Q9H3Z4 198 aa18.44■□□□□ 0.54
LINC01561-201ENST00000369071 RRBP1Q9P2E9 1410 aaKnown RBP18.44■□□□□ 0.54
LINC01561-201ENST00000369071 CUX1P39880 1505 aa18.42■□□□□ 0.54
LINC01561-201ENST00000369071 CUX2O14529 1486 aa18.4■□□□□ 0.54
LINC01561-201ENST00000369071 HMGXB3Q12766 1538 aa18.38■□□□□ 0.53
LINC01561-201ENST00000369071 KIF27Q86VH2 1401 aa18.37■□□□□ 0.53
LINC01561-201ENST00000369071 NCAPD3P42695 1498 aa18.36■□□□□ 0.53
LINC01561-201ENST00000369071 ARHGAP35Q9NRY4 1499 aa18.33■□□□□ 0.52
LINC01561-201ENST00000369071 CCNB3Q8WWL7 1395 aa18.31■□□□□ 0.52
LINC01561-201ENST00000369071 CFTRP13569 1480 aa18.29■□□□□ 0.52
LINC01561-201ENST00000369071 SUPT16HQ9Y5B9 1047 aaKnown RBP18.21■□□□□ 0.51
LINC01561-201ENST00000369071 MAP3K1Q13233 1512 aa18.21■□□□□ 0.51
LINC01561-201ENST00000369071 MAPKBP1O60336 1514 aa18.19■□□□□ 0.5
LINC01561-201ENST00000369071 RAB3GAP2Q9H2M9 1393 aa18.18■□□□□ 0.5
LINC01561-201ENST00000369071 TIAM1Q13009 1591 aa18.18■□□□□ 0.5
LINC01561-201ENST00000369071 IGF1RP08069 1367 aa18.17■□□□□ 0.5
LINC01561-201ENST00000369071 PRDM2Q13029 1718 aa18.16■□□□□ 0.5
LINC01561-201ENST00000369071 ITGAEP38570 1179 aa18.15■□□□□ 0.5
LINC01561-201ENST00000369071 LRRC9Q6ZRR7 1453 aa18.11■□□□□ 0.49
LINC01561-201ENST00000369071 SETD5Q9C0A6 1442 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms