Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 PBX2P1-201ENST00000493219 1291 ntBASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
PCDHB3Q9Y5E6 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 AL022069.1-201ENST00000568025 1636 ntBASIC21.84■■□□□ 1.09
PCDHB3Q9Y5E6 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.83■■□□□ 1.09
PCDHB3Q9Y5E6 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.83■■□□□ 1.08
PCDHB3Q9Y5E6 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.83■■□□□ 1.08
PCDHB3Q9Y5E6 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHB3Q9Y5E6 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHB3Q9Y5E6 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PCDHB3Q9Y5E6 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 AC106739.1-201ENST00000617035 715 ntBASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDHB3Q9Y5E6 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDHB3Q9Y5E6 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 AC142381.2-201ENST00000566120 298 ntBASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDHB3Q9Y5E6 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 AL117328.2-201ENST00000624617 1940 ntBASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 CLDN5-201ENST00000403084 2357 ntBASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 SRD5A1P1-201ENST00000442297 786 ntBASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDHB3Q9Y5E6 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.78■■□□□ 1.08
PCDHB3Q9Y5E6 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 AL161729.1-201ENST00000604104 1402 ntBASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDHB3Q9Y5E6 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
PCDHB3Q9Y5E6 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDHB3Q9Y5E6 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms