Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 AC026202.3-201ENST00000600805 1127 ntBASIC20.8■□□□□ 0.92
USE1Q9NZ43 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
USE1Q9NZ43 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
USE1Q9NZ43 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.79■□□□□ 0.92
USE1Q9NZ43 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
USE1Q9NZ43 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
USE1Q9NZ43 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.78■□□□□ 0.92
USE1Q9NZ43 AL022069.1-201ENST00000568025 1636 ntBASIC20.78■□□□□ 0.92
USE1Q9NZ43 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USE1Q9NZ43 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.78■□□□□ 0.92
USE1Q9NZ43 AL137060.1-201ENST00000618151 2648 ntBASIC20.78■□□□□ 0.92
USE1Q9NZ43 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.78■□□□□ 0.92
USE1Q9NZ43 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
USE1Q9NZ43 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
USE1Q9NZ43 AC007029.1-201ENST00000604183 313 ntBASIC20.78■□□□□ 0.92
USE1Q9NZ43 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 C11orf96-202ENST00000528572 1834 ntBASIC20.78■□□□□ 0.92
USE1Q9NZ43 AC092053.2-201ENST00000640557 1818 ntBASIC20.78■□□□□ 0.92
USE1Q9NZ43 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
USE1Q9NZ43 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USE1Q9NZ43 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USE1Q9NZ43 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.77■□□□□ 0.92
USE1Q9NZ43 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.77■□□□□ 0.92
USE1Q9NZ43 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.77■□□□□ 0.91
USE1Q9NZ43 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USE1Q9NZ43 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USE1Q9NZ43 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.91
USE1Q9NZ43 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
USE1Q9NZ43 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
USE1Q9NZ43 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 MIR639-201ENST00000384974 98 ntBASIC20.76■□□□□ 0.91
USE1Q9NZ43 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.76■□□□□ 0.91
USE1Q9NZ43 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
USE1Q9NZ43 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.76■□□□□ 0.91
USE1Q9NZ43 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.76■□□□□ 0.91
USE1Q9NZ43 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
USE1Q9NZ43 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.75■□□□□ 0.91
USE1Q9NZ43 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.75■□□□□ 0.91
USE1Q9NZ43 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
USE1Q9NZ43 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USE1Q9NZ43 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.74■□□□□ 0.91
USE1Q9NZ43 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USE1Q9NZ43 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USE1Q9NZ43 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.74■□□□□ 0.91
USE1Q9NZ43 ALDH1A3-203ENST00000557963 1670 ntBASIC20.74■□□□□ 0.91
USE1Q9NZ43 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USE1Q9NZ43 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.74■□□□□ 0.91
USE1Q9NZ43 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.73■□□□□ 0.91
USE1Q9NZ43 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
USE1Q9NZ43 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
USE1Q9NZ43 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USE1Q9NZ43 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USE1Q9NZ43 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms