Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
TM9SF3Q9HD45 ALDH1A3-203ENST00000557963 1670 ntBASIC22.39■■□□□ 1.18
TM9SF3Q9HD45 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC22.39■■□□□ 1.18
TM9SF3Q9HD45 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
TM9SF3Q9HD45 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 SP2-202ENST00000613139 908 ntTSL 5 BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
TM9SF3Q9HD45 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
TM9SF3Q9HD45 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 AK1-201ENST00000223836 736 ntTSL 3 BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 AC126544.1-201ENST00000580842 1059 ntBASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
TM9SF3Q9HD45 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
TM9SF3Q9HD45 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 AC141586.4-201ENST00000624558 1573 ntBASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
TM9SF3Q9HD45 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.33■■□□□ 1.17
TM9SF3Q9HD45 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 EI24-204ENST00000527235 1625 ntTSL 5 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.32■■□□□ 1.16
TM9SF3Q9HD45 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TM9SF3Q9HD45 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms