Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
EBF3Q9H4W6 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.33■■□□□ 1.33
EBF3Q9H4W6 IRS3P-201ENST00000223076 1006 ntBASIC23.33■■□□□ 1.33
EBF3Q9H4W6 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
EBF3Q9H4W6 AC097381.1-201ENST00000429019 1296 ntBASIC23.33■■□□□ 1.33
EBF3Q9H4W6 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
EBF3Q9H4W6 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC23.33■■□□□ 1.33
EBF3Q9H4W6 ANKRD20A6P-201ENST00000618763 204 ntBASIC23.33■■□□□ 1.33
EBF3Q9H4W6 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
EBF3Q9H4W6 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC23.32■■□□□ 1.32
EBF3Q9H4W6 AC087623.3-201ENST00000607047 1098 ntBASIC23.32■■□□□ 1.32
EBF3Q9H4W6 AC233992.3-201ENST00000607491 485 ntBASIC23.32■■□□□ 1.32
EBF3Q9H4W6 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.32■■□□□ 1.32
EBF3Q9H4W6 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.32■■□□□ 1.32
EBF3Q9H4W6 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
EBF3Q9H4W6 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
EBF3Q9H4W6 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 AC022211.4-201ENST00000625094 2161 ntBASIC23.31■■□□□ 1.32
EBF3Q9H4W6 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
EBF3Q9H4W6 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 pRNA.6-201ENST00000610482 90 ntBASIC23.3■■□□□ 1.32
EBF3Q9H4W6 pRNA.5-201ENST00000612139 90 ntBASIC23.3■■□□□ 1.32
EBF3Q9H4W6 pRNA.11-201ENST00000618423 90 ntBASIC23.3■■□□□ 1.32
EBF3Q9H4W6 pRNA.13-201ENST00000619112 90 ntBASIC23.3■■□□□ 1.32
EBF3Q9H4W6 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
EBF3Q9H4W6 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 BX842568.3-201ENST00000418104 571 ntBASIC23.29■■□□□ 1.32
EBF3Q9H4W6 EI24-204ENST00000527235 1625 ntTSL 5 BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.29■■□□□ 1.32
EBF3Q9H4W6 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 PREB-202ENST00000406567 1910 ntTSL 5 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 GRAMD4P2-201ENST00000423297 1097 ntBASIC23.28■■□□□ 1.32
EBF3Q9H4W6 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
EBF3Q9H4W6 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
EBF3Q9H4W6 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
EBF3Q9H4W6 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 PARL-206ENST00000435888 1098 ntTSL 5 BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 MPST-208ENST00000628507 698 ntTSL 5 BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 GTSE1-AS1-202ENST00000623117 1518 ntBASIC23.26■■□□□ 1.31
EBF3Q9H4W6 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.26■■□□□ 1.31
EBF3Q9H4W6 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 AC012676.1-201ENST00000574705 1949 ntBASIC23.25■■□□□ 1.31
EBF3Q9H4W6 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
EBF3Q9H4W6 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
EBF3Q9H4W6 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
EBF3Q9H4W6 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
EBF3Q9H4W6 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.24■■□□□ 1.31
EBF3Q9H4W6 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
EBF3Q9H4W6 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC23.24■■□□□ 1.31
EBF3Q9H4W6 SNX3-202ENST00000349379 890 ntTSL 2 BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms