Protein–RNA interactions for Protein: Q9BSM1

PCGF1, Polycomb group RING finger protein 1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCGF1Q9BSM1 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
PCGF1Q9BSM1 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
PCGF1Q9BSM1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC18.66■□□□□ 0.58
PCGF1Q9BSM1 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.66■□□□□ 0.58
PCGF1Q9BSM1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
PCGF1Q9BSM1 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCGF1Q9BSM1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
PCGF1Q9BSM1 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCGF1Q9BSM1 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCGF1Q9BSM1 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCGF1Q9BSM1 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
PCGF1Q9BSM1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 ALDH1A3-203ENST00000557963 1670 ntBASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
PCGF1Q9BSM1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 AC110285.6-201ENST00000617652 491 ntBASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
PCGF1Q9BSM1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
PCGF1Q9BSM1 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
PCGF1Q9BSM1 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 UNC93B3-201ENST00000308076 687 ntBASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 MIR638-201ENST00000385237 100 ntBASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 AC009102.2-201ENST00000606772 1639 ntBASIC18.6■□□□□ 0.57
PCGF1Q9BSM1 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 PBX2P1-201ENST00000493219 1291 ntBASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.59■□□□□ 0.57
PCGF1Q9BSM1 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms