Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC26.94■■□□□ 1.9
SMC1BQ8NDV3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC26.94■■□□□ 1.9
SMC1BQ8NDV3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC26.94■■□□□ 1.9
SMC1BQ8NDV3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 MFF-208ENST00000409616 1247 ntTSL 5 BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 AC069152.1-201ENST00000438030 544 ntBASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 TPRG1LP1-201ENST00000598702 760 ntBASIC26.93■■□□□ 1.9
SMC1BQ8NDV3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
SMC1BQ8NDV3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 AC133637.1-201ENST00000624115 1537 ntBASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 AL022069.1-201ENST00000568025 1636 ntBASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 AL138781.1-201ENST00000566567 1274 ntBASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 ITM2C-210ENST00000620962 501 ntBASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.91■■□□□ 1.9
SMC1BQ8NDV3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 GUSBP6-202ENST00000438529 1198 ntBASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 AC010525.1-201ENST00000585559 441 ntBASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 AL050303.2-201ENST00000619798 666 ntBASIC26.9■■□□□ 1.9
SMC1BQ8NDV3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SMC1BQ8NDV3 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
SMC1BQ8NDV3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC26.89■■□□□ 1.9
SMC1BQ8NDV3 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
SMC1BQ8NDV3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
SMC1BQ8NDV3 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
SMC1BQ8NDV3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
SMC1BQ8NDV3 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 KRT18P29-201ENST00000397031 1267 ntBASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 POU5F1P3-201ENST00000428824 1078 ntBASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 SLC7A5P2-201ENST00000553010 536 ntBASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.88■■□□□ 1.89
SMC1BQ8NDV3 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC26.87■■□□□ 1.89
SMC1BQ8NDV3 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SMC1BQ8NDV3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
SMC1BQ8NDV3 SLC29A4P1-201ENST00000398760 971 ntBASIC26.86■■□□□ 1.89
SMC1BQ8NDV3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
SMC1BQ8NDV3 OR2I1P-207ENST00000453522 948 ntBASIC26.86■■□□□ 1.89
SMC1BQ8NDV3 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.86■■□□□ 1.89
SMC1BQ8NDV3 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
SMC1BQ8NDV3 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
SMC1BQ8NDV3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC26.83■■□□□ 1.89
SMC1BQ8NDV3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC26.83■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms