Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLIP4Q8N3C7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLIP4Q8N3C7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CLIP4Q8N3C7 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 EP400NL-214ENST00000641289 2402 ntBASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 AL031848.2-201ENST00000607670 837 ntBASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CLIP4Q8N3C7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLIP4Q8N3C7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
CLIP4Q8N3C7 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CLIP4Q8N3C7 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CLIP4Q8N3C7 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
CLIP4Q8N3C7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
CLIP4Q8N3C7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP4Q8N3C7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CLIP4Q8N3C7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 AC137630.3-201ENST00000607245 391 ntBASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 SLC25A24-204ENST00000569674 2357 ntBASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CLIP4Q8N3C7 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 SNX5-217ENST00000606557 1087 ntBASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CLIP4Q8N3C7 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 SENP5-202ENST00000419026 973 ntTSL 3 BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.79■□□□□ 0.92
CLIP4Q8N3C7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms