Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
TRIM40Q6P9F5 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 AL356740.2-201ENST00000601559 647 ntBASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 ANOS2P-203ENST00000472227 1816 ntBASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.45■■□□□ 1.02
TRIM40Q6P9F5 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TRIM40Q6P9F5 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 AL117332.1-201ENST00000622628 974 ntBASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.43■■□□□ 1.02
TRIM40Q6P9F5 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.42■■□□□ 1.02
TRIM40Q6P9F5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 AC092068.2-201ENST00000590491 1708 ntBASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
TRIM40Q6P9F5 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 MIR3621-201ENST00000580529 85 ntBASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
TRIM40Q6P9F5 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
TRIM40Q6P9F5 AC079630.1-202ENST00000618127 1840 ntBASIC21.39■■□□□ 1.02
TRIM40Q6P9F5 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 AC009102.2-201ENST00000606772 1639 ntBASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.39■■□□□ 1.01
TRIM40Q6P9F5 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 C9orf163-202ENST00000624034 2573 ntBASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
TRIM40Q6P9F5 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
TRIM40Q6P9F5 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
TRIM40Q6P9F5 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM40Q6P9F5 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM40Q6P9F5 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRIM40Q6P9F5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.36■■□□□ 1.01
TRIM40Q6P9F5 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms