Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
PDLIM3Q53GG5 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 CD37-213ENST00000598095 1598 ntTSL 2 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC18.43■□□□□ 0.54
PDLIM3Q53GG5 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 AC090877.2-201ENST00000558441 1738 ntBASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 AC135279.3-201ENST00000610945 1311 ntBASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
PDLIM3Q53GG5 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 AC092068.2-201ENST00000590491 1708 ntBASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 TSPY9P-201ENST00000440215 945 ntBASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 TSPY11P-201ENST00000442607 1045 ntBASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
PDLIM3Q53GG5 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 SSSCA1-AS1-201ENST00000567594 614 ntBASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
PDLIM3Q53GG5 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
PDLIM3Q53GG5 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 RPS2P7-201ENST00000447334 885 ntBASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
PDLIM3Q53GG5 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 ANOS2P-203ENST00000472227 1816 ntBASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PDLIM3Q53GG5 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 DUSP8P3-201ENST00000399571 1760 ntBASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
PDLIM3Q53GG5 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms