Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 LINC00565-201ENST00000562710 2331 ntBASIC17.02■□□□□ 0.32
HIST1H1AQ02539 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HIST1H1AQ02539 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
HIST1H1AQ02539 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 ANOS2P-203ENST00000472227 1816 ntBASIC17.01■□□□□ 0.31
HIST1H1AQ02539 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 MIR4281-201ENST00000580852 62 ntBASIC17.01■□□□□ 0.31
HIST1H1AQ02539 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.01■□□□□ 0.31
HIST1H1AQ02539 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HIST1H1AQ02539 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
HIST1H1AQ02539 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
HIST1H1AQ02539 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
HIST1H1AQ02539 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HIST1H1AQ02539 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HIST1H1AQ02539 KRT18P24-201ENST00000344739 1156 ntBASIC17■□□□□ 0.31
HIST1H1AQ02539 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17■□□□□ 0.31
HIST1H1AQ02539 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC17■□□□□ 0.31
HIST1H1AQ02539 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
HIST1H1AQ02539 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17■□□□□ 0.31
HIST1H1AQ02539 ALDH1A3-203ENST00000557963 1670 ntBASIC17■□□□□ 0.31
HIST1H1AQ02539 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC17■□□□□ 0.31
HIST1H1AQ02539 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC17■□□□□ 0.31
HIST1H1AQ02539 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
HIST1H1AQ02539 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
HIST1H1AQ02539 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 KRT8P33-201ENST00000508125 1423 ntBASIC16.99■□□□□ 0.31
HIST1H1AQ02539 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 AL121603.2-201ENST00000557373 2117 ntBASIC16.99■□□□□ 0.31
HIST1H1AQ02539 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
HIST1H1AQ02539 AC092068.2-201ENST00000590491 1708 ntBASIC16.99■□□□□ 0.31
HIST1H1AQ02539 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
HIST1H1AQ02539 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HIST1H1AQ02539 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
HIST1H1AQ02539 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HIST1H1AQ02539 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC16.97■□□□□ 0.31
HIST1H1AQ02539 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
HIST1H1AQ02539 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms