Protein–RNA interactions for Protein: P56880

CLDN20, Claudin-20, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN20P56880 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN20P56880 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN20P56880 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
CLDN20P56880 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN20P56880 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
CLDN20P56880 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CLDN20P56880 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CLDN20P56880 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 AL117328.2-201ENST00000624617 1940 ntBASIC20.47■□□□□ 0.87
CLDN20P56880 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.47■□□□□ 0.87
CLDN20P56880 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CLDN20P56880 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 AL512631.2-201ENST00000604634 923 ntBASIC20.47■□□□□ 0.87
CLDN20P56880 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC20.47■□□□□ 0.87
CLDN20P56880 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.47■□□□□ 0.87
CLDN20P56880 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CLDN20P56880 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CLDN20P56880 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.46■□□□□ 0.87
CLDN20P56880 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLDN20P56880 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 MIR4466-201ENST00000606121 54 ntBASIC20.46■□□□□ 0.87
CLDN20P56880 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.46■□□□□ 0.87
CLDN20P56880 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLDN20P56880 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CLDN20P56880 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CLDN20P56880 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.45■□□□□ 0.87
CLDN20P56880 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
CLDN20P56880 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN20P56880 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN20P56880 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN20P56880 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CLDN20P56880 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
CLDN20P56880 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.45■□□□□ 0.86
CLDN20P56880 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN20P56880 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
CLDN20P56880 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN20P56880 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CLDN20P56880 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.44■□□□□ 0.86
CLDN20P56880 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CLDN20P56880 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN20P56880 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN20P56880 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.44■□□□□ 0.86
CLDN20P56880 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.43■□□□□ 0.86
CLDN20P56880 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CLDN20P56880 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.43■□□□□ 0.86
CLDN20P56880 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.43■□□□□ 0.86
CLDN20P56880 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CLDN20P56880 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CLDN20P56880 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN20P56880 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN20P56880 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN20P56880 AL136116.3-201ENST00000402907 1138 ntBASIC20.42■□□□□ 0.86
CLDN20P56880 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.42■□□□□ 0.86
CLDN20P56880 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN20P56880 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN20P56880 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLDN20P56880 ABCB10P4-201ENST00000566803 2184 ntBASIC20.41■□□□□ 0.86
CLDN20P56880 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN20P56880 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN20P56880 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN20P56880 C9orf163-202ENST00000624034 2573 ntBASIC20.41■□□□□ 0.86
CLDN20P56880 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN20P56880 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.41■□□□□ 0.86
CLDN20P56880 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLDN20P56880 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms