Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
RFC3P40938 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.47■□□□□ 0.87
RFC3P40938 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC3P40938 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC3P40938 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC3P40938 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RFC3P40938 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC3P40938 AC091305.1-201ENST00000479476 895 ntBASIC20.47■□□□□ 0.87
RFC3P40938 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.47■□□□□ 0.87
RFC3P40938 AL138724.1-201ENST00000606771 1088 ntBASIC20.47■□□□□ 0.87
RFC3P40938 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC3P40938 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RFC3P40938 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
RFC3P40938 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC20.47■□□□□ 0.87
RFC3P40938 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
RFC3P40938 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC3P40938 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.46■□□□□ 0.87
RFC3P40938 AC099791.1-201ENST00000416440 715 ntBASIC20.46■□□□□ 0.87
RFC3P40938 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.46■□□□□ 0.87
RFC3P40938 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.46■□□□□ 0.87
RFC3P40938 CA15P2-201ENST00000611168 834 ntBASIC20.46■□□□□ 0.87
RFC3P40938 AC136469.2-201ENST00000623944 1028 ntBASIC20.46■□□□□ 0.87
RFC3P40938 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC3P40938 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFC3P40938 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.87
RFC3P40938 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC3P40938 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC20.45■□□□□ 0.86
RFC3P40938 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFC3P40938 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.45■□□□□ 0.86
RFC3P40938 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFC3P40938 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RFC3P40938 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.44■□□□□ 0.86
RFC3P40938 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC3P40938 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC3P40938 AC027682.1-201ENST00000562846 899 ntBASIC20.44■□□□□ 0.86
RFC3P40938 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.44■□□□□ 0.86
RFC3P40938 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
RFC3P40938 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFC3P40938 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 RARRES2P6-201ENST00000567333 442 ntBASIC20.43■□□□□ 0.86
RFC3P40938 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.43■□□□□ 0.86
RFC3P40938 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
RFC3P40938 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
RFC3P40938 RASA4CP-201ENST00000424092 1398 ntBASIC20.43■□□□□ 0.86
RFC3P40938 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.43■□□□□ 0.86
RFC3P40938 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RFC3P40938 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RFC3P40938 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.42■□□□□ 0.86
RFC3P40938 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
RFC3P40938 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.42■□□□□ 0.86
RFC3P40938 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RFC3P40938 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.42■□□□□ 0.86
RFC3P40938 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RFC3P40938 AC141586.4-201ENST00000624558 1573 ntBASIC20.42■□□□□ 0.86
RFC3P40938 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 AL139125.2-201ENST00000623134 1869 ntBASIC20.41■□□□□ 0.86
RFC3P40938 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RFC3P40938 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 AC004812.2-201ENST00000611079 2094 ntBASIC20.41■□□□□ 0.86
RFC3P40938 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.41■□□□□ 0.86
RFC3P40938 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.41■□□□□ 0.86
RFC3P40938 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.41■□□□□ 0.86
RFC3P40938 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RFC3P40938 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RFC3P40938 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFC3P40938 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFC3P40938 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RFC3P40938 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
RFC3P40938 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms